Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05554 ATGCAGCTGAAAACTCAGTTTTACTTCTTCTGTTGCCTCTGCTGTTTCTCTTATGGTTTTGCTGCTGCAGGGAGTGATGAAGTATCTGCTTTACTATCTATAAAAGCAGCTTTCATTGATCCCTTGAATAGCCTACATGATTGGAAATTGTTGGACAAAGGGAAGGATGCAGCTAAAGCTCACTGTAACTGGACTGGTGTCCAGTGCAACTCAGATGGAGCTGTAGAGAAGCTTGATCTTTCCCACATGAATCTGAGTGGCAGTGTCTCCAATGAGATACAAAGGCTAACAAGTCTCACTACTCTCAACTTGTGCTGCAATGAATTCTCATTATCACTGTCAAACTCCATAGCCAATCTCACCTCACTGAAGAGCCTTGATGTAAGCCAGAATTTCTTCATTGGTGACTTTCCATTAGGCCTTGGAAAGGCATCAGGGTTTATAACCTTAAATGCATCCAGCAACAATTTCTCAGGTTTTCTTCCTGAGGACCTTGGAAATGTCTCTTCCTTAGAGAGTCTGGATCTCAGAGGCAGTTTCTTTGAAGGGTCAATTCCAAAATCCTTCAGTAACTTGAGCAAGTTGAAGTTCCTAGGTCTATCTGGGAATAATCTTACCGGAGAGATCCCAGGTGAGCTGGGACTACTTTCATCACTGGAGTATATGATCATTGGATACAATGAATTTGAAGGTGGGATTCCAGCAGAGTTTGGTAATCTCACCAAGATGAAGTATCTTGATGTAGCAGAAGGTAATCTTGGTGGTCAAATTCCAGCTGAGTTGGGAAAGCTTACATTATTGAATACAGTTTTCTTATACAAGAACAATTTTGAAGGCAAGATTCCACCATCAGTTGGCAACATGACTTCATTAGTGCAGTTAGATCTCTCAGATAACATGTTATCAGGAAATATTCCATCTGAAATAAGTCAGCTGAAGAATTTACAGCTTCTGAACTTCATGCGAAACCAGCTATCTGGTCCTGTGCCTTCTGGCCTTGGGAATTTGCCTCAACTAGAGGTGCTTGAGCTATGGAACAATTCCTTGTCAGGGCCATTGCCTAGTGACCTTGGCAAGAATTCACCACTTCAGTGGTTGGATGTATCATCCAATTCACTCTCTGGTGAGATTCCAGAAACTCTTTGCACCAAGGGCAATCTCACCAAGCTTATACTTTTCAACAATGCTTTCTTGGGTCCAATTCCAGCAAGTCTATCAACATGTCCTTCACTTGTTCGTGTTCGAATTCAAAACAATTTTCTTTCTGGGACAATTCCTGTGGGTTTTGGTAAGCTTATGAAGCTTCAGAGGTTAGAATTGGCTAACAATAGTCTTACTGGTGCAATTCCTAATGATATTGCTTCTTCCACATCCCTTTCTTTCATAGATTTCTCCAGAAACAACCTCCACTCTTCTCTTCCTTCAACCATTATTTCCATTCCAAATATGCAAACTTTCATTGTCTCCAACAACAACTTGAAGGGTGAAATCCCAGGCCAATTCCAGGACTGTCCCTCACTTGGGGTCCTTGATCTCTCATCAAATGGTTTCTCTGGAAGTATTCCAGCAAGCATTGCTTCATGTCAGAAATTGGTAAAACTAAACCTACAGAACAACCAATTGACTGGCGATATCCTAAAAGCAATAGCAAGCATGCCTACTCTGGCCATTCTTGATCTTGCTAACAACTCTCTGACTGGTCAAATACCTGAAAGCTTTGGTATGTCCCCAGCTCTGGAAACATTCAATGTCTCATACAACAAGCTAGAAGGTCCTGTCCCAGCAAATGGTGTGCTAAGAACAATAAACCCAAATGATCTTGTGGGCAATGCTGGCTTATGTGGTGGTGTCCTCCCTCCTTGTGGCCACAACCCTGTATATTCATTAAGGCATGGGAGCTCACATGCAAAGCACATTATTCTAGGATGGATAATTGGAATATCATCAATCATAGCCATTGGGGTTGCAACTTTGGTAGCAAGATCTATATACATAAGGTGGTACACTGAAGGATTGTGCTTCCGAGGAAGATTTTATAAAGGTAGCAAGGGGTGGCCTTGGAGATTGATGGCATTTCAGAGGCTTGATTTTACAAGCACTGATATTTTATCCTGCATCAAGGAAACAAATGTGATTGGCATGGGTGCAACTGGGATTGTTTATAAGGCTGAGATACCACAGTCAAGTACAGTTGTGGCAGTCAAAAAGTTGTGGAGATCAGGATCTGATATTGAAGTAGGCAGTAGTGATGATCTTGTTGGAGAGGTGAATCTTTTAGGGAGGCTAAGGCATAGGAACATTGTTAGACTACTAGGCTTTCTGTATAATGACAGTGATGTGATGATAGTTTATGAATTTATGCTCAATGGAAACCTAGGAGATGCCTTGCATGGTAAACAAGCTGGGAGATTGCTTGTAGACTGGGTTTCCAGGTATAACATAGCTCTAGGAATTGCACAAGGACTTGCTTATCTTCATCATGACTGTCATCCACCTGTTATCCATCGAGACATCAAGTCAAATAATATACTTCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGGTTGGCCAAGATGATGCTCCGGAAGAATGAAACAGTCTCCATGATTGCTGGATCCTATGGATACATTGCCCCTGAATATGGATACTCCTTGAAGGTGGATGAAAAGATTGACATTTACAGTTATGGAGTAGTTCTGTTGGAGCTTCTCACAGGAAAGCGGCCTTTAGATCCAGAGTTTGGAGAATCTATAGACATTGTAGGGTGGATTAGAATGAAGATAGACAAAAAATCTCCAGAAGAAGCATTAGATCCCAGTGTAGGAAACTGCAAGCATGTTCAAGAAGAGATGCTTTTAGTTCTCAGAATAGCACTTCTTTGCACTGCCAAGCTCCCCAAGGACAGACCCTCCATGAGGGATGTTATAATGATGCTAGGGGAGGCAAAGCCTAGGAGAAAGAGTGGTAGGAGCAATGAAACATTTGCAGCTAACAAGGAAATGCCAGTTATTAGTACATCACCAGTTAATGGCCTTCTGTAG 3048 0.4186 MQLKTQFYFFCCLCCFSYGFAAAGSDEVSALLSIKAAFIDPLNSLHDWKLLDKGKDAAKAHCNWTGVQCNSDGAVEKLDLSHMNLSGSVSNEIQRLTSLTTLNLCCNEFSLSLSNSIANLTSLKSLDVSQNFFIGDFPLGLGKASGFITLNASSNNFSGFLPEDLGNVSSLESLDLRGSFFEGSIPKSFSNLSKLKFLGLSGNNLTGEIPGELGLLSSLEYMIIGYNEFEGGIPAEFGNLTKMKYLDVAEGNLGGQIPAELGKLTLLNTVFLYKNNFEGKIPPSVGNMTSLVQLDLSDNMLSGNIPSEISQLKNLQLLNFMRNQLSGPVPSGLGNLPQLEVLELWNNSLSGPLPSDLGKNSPLQWLDVSSNSLSGEIPETLCTKGNLTKLILFNNAFLGPIPASLSTCPSLVRVRIQNNFLSGTIPVGFGKLMKLQRLELANNSLTGAIPNDIASSTSLSFIDFSRNNLHSSLPSTIISIPNMQTFIVSNNNLKGEIPGQFQDCPSLGVLDLSSNGFSGSIPASIASCQKLVKLNLQNNQLTGDILKAIASMPTLAILDLANNSLTGQIPESFGMSPALETFNVSYNKLEGPVPANGVLRTINPNDLVGNAGLCGGVLPPCGHNPVYSLRHGSSHAKHIILGWIIGISSIIAIGVATLVARSIYIRWYTEGLCFRGRFYKGSKGWPWRLMAFQRLDFTSTDILSCIKETNVIGMGATGIVYKAEIPQSSTVVAVKKLWRSGSDIEVGSSDDLVGEVNLLGRLRHRNIVRLLGFLYNDSDVMIVYEFMLNGNLGDALHGKQAGRLLVDWVSRYNIALGIAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMLRKNETVSMIAGSYGYIAPEYGYSLKVDEKIDIYSYGVVLLELLTGKRPLDPEFGESIDIVGWIRMKIDKKSPEEALDPSVGNCKHVQEEMLLVLRIALLCTAKLPKDRPSMRDVIMMLGEAKPRRKSGRSNETFAANKEMPVISTSPVNGLL. 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05554 1015 Pfam Leucine Rich Repeat 170 192 IPR001611 GO:0005515
Seca8g05554 1015 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Seca8g05554 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 24 179 - -
Seca8g05554 1015 FunFam MDIS1-interacting receptor like kinase 1 791 1000 - -
Seca8g05554 1015 Gene3D Transferase(Phosphotransferase) domain 1 791 1005 - -
Seca8g05554 1015 Gene3D Ribonuclease Inhibitor 276 383 IPR032675 -
Seca8g05554 1015 SMART LRR_typ_2 288 312 IPR003591 -
Seca8g05554 1015 SMART LRR_typ_2 336 360 IPR003591 -
Seca8g05554 1015 SMART LRR_typ_2 96 119 IPR003591 -
Seca8g05554 1015 SMART LRR_typ_2 192 216 IPR003591 -
Seca8g05554 1015 SMART LRR_typ_2 552 575 IPR003591 -
Seca8g05554 1015 SMART LRR_typ_2 432 456 IPR003591 -
Seca8g05554 1015 SUPERFAMILY Protein kinase-like (PK-like) 698 981 IPR011009 -
Seca8g05554 1015 FunFam MDIS1-interacting receptor like kinase 1 706 790 - -
Seca8g05554 1015 SUPERFAMILY L domain-like 60 350 - -
Seca8g05554 1015 ProSiteProfiles Protein kinase domain profile. 706 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05554 1015 Gene3D Ribonuclease Inhibitor 384 624 IPR032675 -
Seca8g05554 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 180 280 - -
Seca8g05554 1015 Pfam Leucine rich repeat N-terminal domain 26 70 IPR013210 -
Seca8g05554 1015 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 365 625 - -
Seca8g05554 1015 ProSiteProfiles Leucine-rich repeat profile. 194 216 IPR001611 GO:0005515
Seca8g05554 1015 FunFam Leucine-rich repeat receptor protein kinase EMS1 281 364 - -
Seca8g05554 1015 Pfam Protein kinase domain 708 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05554 1015 SMART serkin_6 706 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05554 1015 Gene3D Phosphorylase Kinase; domain 1 706 790 - -
Seca8g05554 1015 ProSitePatterns Protein kinases ATP-binding region signature. 712 736 IPR017441 GO:0005524
Seca8g05554 1015 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Seca8g05554 1015 Gene3D Ribonuclease Inhibitor 178 275 IPR032675 -
Seca8g05554 1015 SUPERFAMILY RNI-like 255 594 - -
Seca8g05554 1015 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 333 466 IPR046959 -
Seca8g05554 1015 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Seca8g05554 1015 Pfam Leucine rich repeat 409 469 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05554 Seca-Chr8 146998099 147001793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05554 1 1015 Receptor kinase-like Gene Family AT1G08590 60.097 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca8g05554 Pkinase 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05554 - - gmx:100788430 1752.64