Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05553 ATGTCAACGGTGTCTAAAGATGATAACTTGGCCCTCTCTTCTGAGGATTCTTCGTCCCCAGATGACTCTGAGCTTGAATTGGGTCTTGGGTTAAGCCTTTCTCACACTGCTCCTCATGCAAAGTCTCACCACCATGCTCCTTATGCTAGAATATTCACGGCTAAGGATTTTCCTTCTTCTTCACCTTCACCTTCCAACGCCACTGCTGGGACCAAGAGAGCTGCTGATTCTCTTGTCGCTAGTAACCGTCCCAGTCAAGTGGTTGGATGGCCTCCCCTTCGAACATATAGAATGAATAGCTTTAATAGCCATGCAAAATCATCTGAAGCATTCAACTCTATGGATGAGAAGAGTAAGAGCAATAATACTGTTGCAAGGAAGACTGCTGACAATGGAAATGATAATAACAACACTGATATCAAAGAGAAAAGACAGCACAGGAGTTCCCCGTTTGTCAAGGTAAATATGGATGGGATACCAATTGGAAGGAAGGTTGATTTGAGCGCTCATAGTTCCTATGAAACCTTAGCTCAAACATTGGAGGATATGTTTAACGAATCAACTACAGCTATCTCATGCAAAGTAGGATCAAATGCGGAGGATCATGGCATAATTATAGGAGGAGAAAGGCATTCAAAATTGTTGGATGGATCTTCCAAGTTTGTGCTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGGTAA 726 0.4298 MSTVSKDDNLALSSEDSSSPDDSELELGLGLSLSHTAPHAKSHHHAPYARIFTAKDFPSSSPSPSNATAGTKRAADSLVASNRPSQVVGWPPLRTYRMNSFNSHAKSSEAFNSMDEKSKSNNTVARKTADNGNDNNNTDIKEKRQHRSSPFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTAISCKVGSNAEDHGIIIGGERHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWG. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05553 241 ProSiteProfiles PB1 domain profile. 149 241 IPR000270 GO:0005515
Seca8g05553 241 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 240 IPR003311 GO:0005634|GO:0006355
Seca8g05553 241 MobiDBLite consensus disorder prediction 107 149 - -
Seca8g05553 241 Gene3D - 143 241 - -
Seca8g05553 241 Pfam AUX/IAA family 30 240 IPR033389 -
Seca8g05553 241 SUPERFAMILY CAD & PB1 domains 147 240 - -
Seca8g05553 241 MobiDBLite consensus disorder prediction 1 18 - -
Seca8g05553 241 MobiDBLite consensus disorder prediction 56 72 - -
Seca8g05553 241 MobiDBLite consensus disorder prediction 54 91 - -
Seca8g05553 241 MobiDBLite consensus disorder prediction 107 135 - -
Seca8g05553 241 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05553 Seca-Chr8 146992450 146997495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05553 77 240 B3 DNA Binding Superfamily AT2G46530 28.313 3.79e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca8g05553 AUX_IAA 9.7e-48 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05553 K14484 - gmx:100527033 342.428