Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05550 ATGGCGCTATGGATGGAAAAGGGTTCCGAGCCCTTGACTGAAACCGAGAAAGCAGACCTTGAAGCCATTGCTGCAATCAAAGAGTCTGCAGCCATTGAACTTAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACACTGATGCCATTAATTGCTACACAAGGGCAATCAATCAGAAAGCATTGAGTGACTCTGAGAACTCTATTATTTTTGCAAATAGAGCCCATGTCAATTTGCTGCTAGGAAATCTTAGACGTGCTCTCACAGATGCTCAAGAGGCAATAAAGTTGTGCCCCTCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCATCTCTTTCACTGAATTTGTTGGCTGAAGCAAAAGAGCATTGTCAAAAGGGTCTTCAGTTGGACCCCAATAATGAGGAATTGAAGAAGCTTGATCTGCAGATTAGTCTGAAGATATCAGAGAATGAAAAGCATGAGGCTGAAGTCTCCAAGGCTGTTGCAGAGGCAAAGGAACTTGTGTCTGCAATAGAATCTAGAGGCTTGAAGATTGGAAAGGCAATGTACCGAGAACTAACTGGATTAAGAAAGCCTGTGTTAGATAAAAATAATATCCTTCATTGGCCTGTTCTTTTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGTGAGACTGACATGTTTTCGGTTCACCTTGATATGATATCCTTTTCTGTGAAATGGTTTATGTGCATTTTACTATCAAACGTATTTGCAGAAGATCAGCCACTGCCATGGGATGTTGAAAACAATTACAAACGCGAATTTATTGAATTATACTATGAGGCTGGTTCTGGACTTCATCTACCTAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTTCTGATGAGGTAGGTGTTGGTGATGAAGAGAAAAATGCAGCTGAGGATCTTAAGCAAAACATGGCAGGCTCCCCTAAATGGATCAAAGTAAATGAAAGGAAAACACTCCATGATGTTCTCGAAGACCCTAATTTCATCATTCCTGGGATCCCAGTCTTCTATGTTGTTTCCAAGCAATCCAGCTTTTATGGCAAGTTCAAAGCTGGAAAATGGGCTCCTCCAAATATATAA 1131 0.405 MALWMEKGSEPLTETEKADLEAIAAIKESAAIELKEKGNQYVKMGKKHYTDAINCYTRAINQKALSDSENSIIFANRAHVNLLLGNLRRALTDAQEAIKLCPSNIKAIYRAAKASLSLNLLAEAKEHCQKGLQLDPNNEELKKLDLQISLKISENEKHEAEVSKAVAEAKELVSAIESRGLKIGKAMYRELTGLRKPVLDKNNILHWPVLFLYAEVMSSDFIEDFCETDMFSVHLDMISFSVKWFMCILLSNVFAEDQPLPWDVENNYKREFIELYYEAGSGLHLPKEKLLHCLLEGTAASDEVGVGDEEKNAAEDLKQNMAGSPKWIKVNERKTLHDVLEDPNFIIPGIPVFYVVSKQSSFYGKFKAGKWAPPNI. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05550 376 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 373 - -
Seca8g05550 376 CDD CTWD_Cns1-like 170 368 - -
Seca8g05550 376 SMART tpr_5 71 104 IPR019734 GO:0005515
Seca8g05550 376 SMART tpr_5 105 138 IPR019734 GO:0005515
Seca8g05550 376 SMART tpr_5 31 66 IPR019734 GO:0005515
Seca8g05550 376 Pfam Tetratricopeptide repeat 106 138 IPR019734 GO:0005515
Seca8g05550 376 Coils Coil 141 175 - -
Seca8g05550 376 Gene3D Tetratricopeptide repeat domain 24 180 IPR011990 GO:0005515
Seca8g05550 376 Pfam Cns1/TTC4 Wheel domain 200 281 IPR044059 GO:0051879
Seca8g05550 376 SUPERFAMILY TPR-like 22 159 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05550 Seca-Chr8 146931761 146937018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05550 30 160 Calmodulin-binding Proteins AT3G25230 33.099 2.85e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05550 K24927 - gmx:100783179 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05550 8 146931761 146937018 Seca8g05550 8 146931761 146937018 ECH