Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05549 ATGGCTACTCGAGGACAAGTCATTACCTGCAAAGCCGCGGTGGCATGGGAACCCAACAAGCCATTAACCATCGAGGACGTTGAGGTGGCTCCGCCACAGGCTGGGGAGGTTCGAGTCCAAATTCTCTACACTGCTCTCTGTCACACCGATGCTTATACTTGGAGCGGCAAGGATCCAGAAGGTCTCTTCCCATGTATACTTGGTCATGAGGCTGCAGGGATTGTGGAAAGTGTTGGGGAAGGTGTTACTGAAGTTCAGCCTGGTGATCATGTCATCCCTTGTTACCAGGCTGAATGTGGAGAGTGCAAGTTTTGCAAATCAGGCAAAACCAATCTGTGTGGCAAAATTCGTGCTGCCACTGGAGTTGGGGTCATGCTGAGCGATCGCAAGAGTCGTTTCTCTATCAATGGAAAGTCAATCTATCATTTTATGGGAACCTCCACATTTAGTCAATATACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGACCCCAAAGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGCGGTGTTCCAACTGGCCTTGGAGCTGTCTGGAACACTGCAAAGGTGGAATCAGGGTCAATTGTTGCGGTTTTCGGTCTTGAAACTGTTGGGCTTGCCGTTGCAGAGGGTGCAAAAGCTGCTGGGGCATCACGGATTATTGGCATAGATGTTGATAGCAACAAGTTTGAAAGAGCAAAGAACTTTGGAGTCACTGAGTTTATTAATCCAAATGAACATGAGAAACCAATTCAGCAGGTAATAGTTGATCAAACAGATGGTGGAGTTGATTATAGTTTTGAGTGTATTGGAAATGTCTCAGTGATGAGGGCTGCTTTGGAATGCTGCCATAAGGTGAGTGCTGCTGATTTCCAGGGCTGGGGGACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCAACTAGACCTTTCCAGTTGGTGACTGGGCGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCCGCTCACAAGTGCCTTGGCTTGTAGACAAGTACTTGAACAAGGAAATCAAGGTTGATGAGTACATCACTCACAGTTTGACTCTTGCGGAGATCAACAAGGCATTTGACCTCATGCATGAAGGAGGATGTCTCCGTTGTGTGCTTGCAATGCATGTGTGA 1161 0.4703 MATRGQVITCKAAVAWEPNKPLTIEDVEVAPPQAGEVRVQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECGECKFCKSGKTNLCGKIRAATGVGVMLSDRKSRFSINGKSIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVPTGLGAVWNTAKVESGSIVAVFGLETVGLAVAEGAKAAGASRIIGIDVDSNKFERAKNFGVTEFINPNEHEKPIQQVIVDQTDGGVDYSFECIGNVSVMRAALECCHKVSAADFQGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYLNKEIKVDEYITHSLTLAEINKAFDLMHEGGCLRCVLAMHV. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05549 386 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
Seca8g05549 386 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Seca8g05549 386 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 347 IPR036291 -
Seca8g05549 386 Gene3D - 182 327 - -
Seca8g05549 386 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Seca8g05549 386 SUPERFAMILY GroES-like 333 382 IPR011032 -
Seca8g05549 386 SUPERFAMILY GroES-like 3 198 IPR011032 -
Seca8g05549 386 Gene3D - 13 379 - -
Seca8g05549 386 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 327 - -
Seca8g05549 386 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Seca8g05549 386 CDD alcohol_DH_class_III 8 382 IPR014183 GO:0006069|GO:0008270|GO:0051903
Seca8g05549 386 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 384 IPR014183 GO:0006069|GO:0008270|GO:0051903
Seca8g05549 386 PANTHER ALCOHOL DEHYDROGENASE 5 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05549 Seca-Chr8 146928441 146931568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05549 10 338 Monolignol Biosynthesis Gene Families AT1G72680 25.893 9.49e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05549 K00121 - gmx:100793008 716.457