Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05543 ATGCCAACCTCGCTCATCTTCCTACTCGCTCTCTTTCACTTGCTGCTTTTCAATTCCTCAGCAAAGTTGGTTTCTACAACAGTGTGGTTAGTTAAACCTTCTTCTGGGCCATCTTCTGCTCCTGTGCCACCTCCATCTTACCAAGGTCCTAGTGTGATACCAAGACCAAAACATCCTCATCATGATCATCGTCACCGCAGCATGAAGCCTTATGCTGTGGCTCCGTCCCCTTCTGAAGACCAAGCTTGTGACCAAATGTGTATGGATCCACTCACAGCAACTCCCTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGACTTACACTGGATGCGGCTCCTTTGGCTGTTTTTCCAGTAATTAATGAGTTAGAGATTGAAGTTGCATCTGGAACGTACTTGAAGCAAAGCCAGGTGAGGATAATGGGTGTCAGTCCTGACATTCAAAATCCTGGAAGAGCCATAGTTGATATTAACTTGGTTCCACTTGGAGAGAAGTTTGACAATACTACTGCAGTTCTGACATATGAGAGATTTTGGCACAAGAAAGTTCCTCTAAATAGGAGTCTTTTTGGTGATTACACAGTCTTGTCCGCTACTTATCCAGGACTGAAGCAGTTGGTGTCAGGGATGCCATCTCCTCCGCCACATGGAACCTTAGCTGGGTGTGGTCCTGATCACCGTGAAAGTGAAGAAGGTATTATCCCATTCACTGCTGATTTTATCAGCAAGAGTGAGAAGATGAGTCTCAGGACCATAATCATCATTGCTTTGTCTTCCATTTTACTCTTGGTGGTTTTGGTTGGAGCATTGTCCATTTTTTTTAAATGGAGAAAAATTAGGAGACCATCAAGTTCTGTTGGCCCTGGATTCACATCGTCACTAAACAAGAGATCTGGTATAGTTGCAGCCATGGAGTCTATGTTGTCAAGCAGAATTACAAGCTCAAGATCAATGTCGCTTGTGTCCACCATGGCTACTTCTATTCTCTCTGTTAAAACATTTTCCTTTTCTGAGCTTGAGAAGGCAACAGATAAGTTCAGTTCACAAAGGGTATTAGGAGAAGGAGGATTTGGGCGTGTTTATCATGGGACATTAGATGATGGAAGTGATGTTGCAGTTAAGCTGCTAACAAGGGATAATCAGAATGGAGACCGTGGATTTATCGTGGAAGTTGAGATGCTATGCCGTTTGCATCATCGTAATCTTGTGAAATTAATTGGTATATGCATACAAGGGCGCAGGCGCTGCTTAGTGTATGAGCTTGTTCGCAATGGCAGTGTCGAGTCTCATTTGCATGGTGTTGACAAGGAAAGCAGCCCTCTGGATTGGGAAGCGCGTACAAAAATTGCCCTTGGAGCTGCAAGAGGGCTAGCCTATCTTCATGAGGATTCTAATCCTCGTGTAATTCACCGAGACTTCAAAGCTAGCAATATATTGTTAGAAGATGACTTTACCCCCAAGGTTTCTGATTTTGGATTAGCAAGAGAAGCAACTGAAGGAAGTCATTATGTTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGCCATTTACTGGTTAAAAGTGATGTTTATAGTTATGGCGTTGTGCTACTTGAACTTCTAACAGGCAGAAAACCAGTAGACATGTCTCAACCTCATGGACAGGAGAATCTTGTAACATGGGCACGGCCACTGTTGACAAGCAGAGAAGGTTTAGAACAGCTGGTGGATCCGTCTTTGGCTGGAAGTTATGACTTTGATGACATGGCAAAAGTGGCTGCTATTGCTTCCATGTGTGTACACCCAGAGGTCACTCAAAGACCTTTTATGGGTGAAGTTGTACAGGCTCTTAAGTTGATATACAATGACAGAGACGAGACCAGTGTGGATTGCTGTAGTTGGAAGGAGTCTTCTGAGTCTGATTTTAGAGATGACATTGCCTTTTATGATAGCAGCAGGTGGAATATTGAAGGGTTAACCCCTCGATTAGCTTATGGGCAACCATCTTCCTTCATCACAATGGAATACAGTTCTGGTCCACTTGAAGGAGTGGAAAAAAGACACCTTTCGGCTTCAAGCTTGATTGGGGACGAGATGCCTTTACCAATTAGGGATGGGAATAGATCAGGTCCCTTGAGAACATCCCGGAGCAAGCTATCCTTCTATAGGTTTACTGGAAGTCTGAGTGAACATGGAATACTTCCTTCCAAACGTGTTTGGAATGATGGTAACTGGCCTTAA 2253 0.4381 MPTSLIFLLALFHLLLFNSSAKLVSTTVWLVKPSSGPSSAPVPPPSYQGPSVIPRPKHPHHDHRHRSMKPYAVAPSPSEDQACDQMCMDPLTATPFGSPCGCVFPMKVRLTLDAAPLAVFPVINELEIEVASGTYLKQSQVRIMGVSPDIQNPGRAIVDINLVPLGEKFDNTTAVLTYERFWHKKVPLNRSLFGDYTVLSATYPGLKQLVSGMPSPPPHGTLAGCGPDHRESEEGIIPFTADFISKSEKMSLRTIIIIALSSILLLVVLVGALSIFFKWRKIRRPSSSVGPGFTSSLNKRSGIVAAMESMLSSRITSSRSMSLVSTMATSILSVKTFSFSELEKATDKFSSQRVLGEGGFGRVYHGTLDDGSDVAVKLLTRDNQNGDRGFIVEVEMLCRLHHRNLVKLIGICIQGRRRCLVYELVRNGSVESHLHGVDKESSPLDWEARTKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEDDFTPKVSDFGLAREATEGSHYVSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPHGQENLVTWARPLLTSREGLEQLVDPSLAGSYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDRDETSVDCCSWKESSESDFRDDIAFYDSSRWNIEGLTPRLAYGQPSSFITMEYSSGPLEGVEKRHLSASSLIGDEMPLPIRDGNRSGPLRTSRSKLSFYRFTGSLSEHGILPSKRVWNDGNWP. 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05543 750 PANTHER OS01G0750732 PROTEIN 76 642 - -
Seca8g05543 750 Gene3D Phosphorylase Kinase; domain 1 321 424 - -
Seca8g05543 750 FunFam Receptor-like serine/threonine-protein kinase ALE2 425 640 - -
Seca8g05543 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Seca8g05543 750 SUPERFAMILY Protein kinase-like (PK-like) 328 624 IPR011009 -
Seca8g05543 750 CDD STKc_IRAK 355 624 - -
Seca8g05543 750 MobiDBLite consensus disorder prediction 37 52 - -
Seca8g05543 750 Pfam Protein tyrosine and serine/threonine kinase 351 620 IPR001245 GO:0004672|GO:0006468
Seca8g05543 750 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Seca8g05543 750 FunFam receptor-like serine/threonine-protein kinase ALE2 322 424 - -
Seca8g05543 750 ProSiteProfiles Protein kinase domain profile. 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05543 750 MobiDBLite consensus disorder prediction 35 75 - -
Seca8g05543 750 Gene3D Transferase(Phosphotransferase) domain 1 425 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05543 Seca-Chr8 146845221 146852511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05543 86 736 Receptor kinase-like Gene Family AT5G56890 54.383 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Seca8g05543 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05543 - - lja:Lj0g3v0221179.1 1093.57