Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05538 ATGGCTGCTGCTGCCAATCCTGTAGTTGGTTCTCAAGTTTGGGTTGAGGATTCTGATGTAGCTTGGATAGATGGTGAGGTCTTGGAGGTTAATGGGGAACAAATCAAAGTCCTTTGCACTTCAGGGAAAACGGTTGCTGTTAAAGCTTCCAGTGTTTATCATAAAGATACCGAAGCCCCGCCGTGTGGAGTGGATGATATGACCAAGCTTGCTTATCTACATGAACCTGGTGTCCTTGATAATCTGAAATCAAGATATGATATCAATGAAATTTATACATATACTGGGAATATACTGATTGCTGTAAACCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGGTTTTGGTGAGCTAAGTCCTCATCCCTTTGCTGTTGCAGATGCAGCATATAGGCTTATGATCAATGAGGGAATCAGCCAGTCAATATTGGTAAGTGGTGAAAGTGGGGCTGGTAAAACAGAAAGCACCAAGTTACTCATGCGCTATCTTGCTTACATGGGAGGGAGAGCTAATTCTGGTGAAGGTAGGACTGTTGAGCAGAAAGTCCTGGAGTCCAATCCCGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAGAGGGGAAGAATTTCTGGAGCTGCTATCAGAACTTATCTGCTGGAAAGATCACGTGTTTGCCAGCTGTCAGATCCAGAGAGGAATTATCACTGTTTTTATATGCTCTGTGCTGCACCTCAAGAGGTTGTTCAGAAGTACAAATTAGGAAACCCAAGAACATTTCATTATCTGAATCAATCAAATTGCTTTGAGTTGGATGGGCTTGATGAGTTTAAAGAATATTGTGATACAAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGAAGCAATATTTCGAGTGGTTGCTGCAATTTTGCATCTTGGGAACATTGAATTTACAAAAGGGAAGGAAGTTGACTCATCTATGCCCAAAGATGAAAAATCTCGGTTTCATCTACAAACTGCTGCTGAACTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAGCGTGTAATTGTTACTCGTGATGAAACTATCACAAAATGGCTGGATCCAGACGCTGCTGCACTTAGCCGAGATGCTTTGGCTAAGATTGTGTACACGAGGTTGTTTGACTGGCTGGTGGATAAAATTAATAATTCAATTGGTCAAGATCCTGACTCAAAGTCCTTAATTGGTGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTCCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAGATTGATTGGAGTTACATTGAGTTTGTTGACAATCAAGATGTTTTGGATCTCATTGAAAAGGTTTTCCCTTCTAACTCCACAATCATTTTTCAGAAACCTGGTGGCATTATTTCTCTTCTTGATGAAGCTTGTATGTTTCCTAGATCAACACATGAAACTTTTGCTCAAAAGCTGTATCAGACGTTCAAAAACCATAAAAGGTTCAGCAAGCCCAAATTGTCACGCAGTGACTTCACAATTTGCCATTATGCTGGTGATGTCACTTATCAAACTGATTTGTTCCTCGACAAAAACAAAGATTATGTTGTTGCTGAACATCAGGCTCTTCTGAATGCTTCAAAATGCCCCTTTGTATCGGGTTTGTTCCCCCCCTCACCTGAGGAATCATCCAAACAATCAAAGTTCTCTTCAATAGGTGCCCGGTTTAAGCAACAATTACAAGCACTACTTGAAACTCTCAGTGCCACTGAGCCACACTACATTCGATGTGTTAAACCCAATAATCTTCTTAAGCCATCAATTTTTGAGAATAAAAATGTTTTGCAGCAACTGCGTTGTGGAGGAGTCATGGAGGCAATAAGGATAAGTTGTGCCGGGTATCCCACTAGAAAAACCTTTGATGAATTTGTGGATCGATTTGGGCTTCTTGCGCCTGAAGCATTGGCTGGAAGTTCTGATGAGGTTGCTGCTTGCAAGAGGATTCTGGATAAGGTTGGACTTAAAGGATATCAGATTGGTAAAACAAAAGTGTTTCTTAGAGCTGGTCAAATGGCAGAACTAGATACACGTAGAAGTGAGGTCTTAGGAAAGTCAGCAAGCATTATTCAGAGGAAAGTCCGTTCCTATTTGGCCCGCCGAAGTTTTGTTTTGATTCGTTTGTCTGCTATACAGATTCAAGCTGCATGCAGAGGACAACTTGCTCGGCAAGTTTATGAGGGATTGCGACAGGAGGCTTCTAGTCTGATGATTCAGAGGTATTTCCGCATGCATATTGCTAGGAAGGCATACAAAGAATTGTACAGCTCAGCTATTTCTATTCAAACTGGTATGCGAGGGATGGCTGCTCGTTGTGAGCTACGCTTTAGGAAGCAGACCAGAGCAGCTATTGTCATTCAGAGCCACTGCCGGAAATACTTGGCACAACATCATTTTATGAACTTAAAGAAGGCCGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGACGAGAATTACGGAAGCTCAAGATGGCTGCAAGAGAAACTGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGACCTTACATTGAGGTTGCAGCTGGAGAAACGCTCGAGGATTGACATGGAAGAAGCAAAAACACAAGAAAATAAAAAATTACAAGCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGTCATTGCTTCAAAAGGAGCGTGAGGCTACAAAAAGAGAAGCGGAGAAAGTGCCTGTCATACAGGAGGTTCCTGTTGTTGATAATGCTTTGTTGGAGAAACTCACTAGTGAAAATGAGAAACTCAAGACTTTGGTGAGTTCGCTGGAGAAGAAAATTGATGAAACAGAAAAAAGGTATGAAGAGGCAAATAAAATTAGTGAAGAAAGGTTGAAGCAAGCTTTGGATGCTGAATCGAAAATAATCCAGTTGAAGACTGCTATGCAAAGGCTTGAGGAGAAATTCTTTGATATGGAATCCGAAAACCAGGTTCTTCGGCAACAGTCTCTGCTTAACTCGTCCGTGAAAACGATGTCAGAACACCTTTCTACCCATGTATCTGAGAAGTTGGAAAATGGTCACCATGTGGCAGAAGATCTGAAAGAAACACAGAGTGTCACACCTGTGAAAAAGTTTGGTACAGAATCTGATAGCAAATTGAGGAGATCCTTCATTGAACGCCAACATGAGAATGTTGATGCACTTATCAGCTGTGTTATGAAAAATATTGGTTTCCATCATGGAAAGCCTGTTGCTGCTTTTACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACAAGTGTATTTGATCGCCTTATCCAGATGATTGGTTCTGCAATTGAGAATCAAGATGACAATGATCTTATGGCCTATTGGCTGTCAAATACATCTGCACTATTGTTTTTACTCCAACAAAGTTTGAAAACTGGTGGTGCAACTGATACAACCCCAGTTAGAAAACCACCAAATCCAACATCCCTCTTTGGAAGGATGGCTATGGGTTTCCGTTCATCTCCTTCTTCTGCAAACCTTCCTGCCCCATTGGAGGTTGTACGCAAGGTAGAGGCTAAATATCCTGCTTTGCTTTTCAAGCAGCAGCTCACAGCCTATGTGGAGAAAATATATGGTATCCTTCGGGACAACTTGAAGAAAGAGTTAGCATCATTGCTTTCATTATGTATCCAGGCTCCAAGAACATCAAAGGGAGTGTTACGATCTGGCCGATCTTTTGGTAAAGATTCTCCCATGGGTCACTGGCAGAGTATTATTGAATCCCTCAACACCCTTCTCTGTACTCTGAAAGAGAACTTCGTGCCTCCAGTCCTTATCCAAAAGATCTACACTCAAACTTTCTCATATATTAATGTTCAACTCTTCAATAGTCTTCTTCTGCGTCGTGATTGTTGCACATTCAGCAACGGGGAATATGTGAAAGCTGGTTTAGCAGAATTGGAGCTGTGGTGTGCCCAAGCAAAGGAAGAGTATGCGGGGTCATCTTGGGATGAACTTAAGCACATAAGACAGGCCGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATCAATGATTTATGCCCTATCATGAGTGTCCAGCAGCTATACAGAATATGTACGCTTTACTGGGATGCTAACTACAATACTCGAAGTGTATCCCCAGATGTCCTTTCAAGCATGAGGGTACTTATGGCTGAGGACTCTAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTGGATGACCTCTCTACATCACTGCAAGAGAAGGAGTTCTCAGACATGAAACCAGCAGAAGAGCTTCTTGAGAATCCTGCCTTCCGATTTTTAAATGAGTAG 4566 0.4115 MAAAANPVVGSQVWVEDSDVAWIDGEVLEVNGEQIKVLCTSGKTVAVKASSVYHKDTEAPPCGVDDMTKLAYLHEPGVLDNLKSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAGFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRANSGEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPQEVVQKYKLGNPRTFHYLNQSNCFELDGLDEFKEYCDTRRAMDVVGISSEEQEAIFRVVAAILHLGNIEFTKGKEVDSSMPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPDAAALSRDALAKIVYTRLFDWLVDKINNSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDVLDLIEKVFPSNSTIIFQKPGGIISLLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTDLFLDKNKDYVVAEHQALLNASKCPFVSGLFPPSPEESSKQSKFSSIGARFKQQLQALLETLSATEPHYIRCVKPNNLLKPSIFENKNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFGLLAPEALAGSSDEVAACKRILDKVGLKGYQIGKTKVFLRAGQMAELDTRRSEVLGKSASIIQRKVRSYLARRSFVLIRLSAIQIQAACRGQLARQVYEGLRQEASSLMIQRYFRMHIARKAYKELYSSAISIQTGMRGMAARCELRFRKQTRAAIVIQSHCRKYLAQHHFMNLKKAAITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRSRIDMEEAKTQENKKLQAALQEMQLQFKETKSLLQKEREATKREAEKVPVIQEVPVVDNALLEKLTSENEKLKTLVSSLEKKIDETEKRYEEANKISEERLKQALDAESKIIQLKTAMQRLEEKFFDMESENQVLRQQSLLNSSVKTMSEHLSTHVSEKLENGHHVAEDLKETQSVTPVKKFGTESDSKLRRSFIERQHENVDALISCVMKNIGFHHGKPVAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSAIENQDDNDLMAYWLSNTSALLFLLQQSLKTGGATDTTPVRKPPNPTSLFGRMAMGFRSSPSSANLPAPLEVVRKVEAKYPALLFKQQLTAYVEKIYGILRDNLKKELASLLSLCIQAPRTSKGVLRSGRSFGKDSPMGHWQSIIESLNTLLCTLKENFVPPVLIQKIYTQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCAQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPIMSVQQLYRICTLYWDANYNTRSVSPDVLSSMRVLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKEFSDMKPAEELLENPAFRFLNE. 1522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05538 1521 Gene3D - 797 844 - -
Seca8g05538 1521 Gene3D - 845 894 - -
Seca8g05538 1521 Gene3D - 747 796 - -
Seca8g05538 1521 PANTHER MYOSIN 843 1455 - -
Seca8g05538 1521 Gene3D - 253 311 - -
Seca8g05538 1521 FunFam Myosin 2 313 426 - -
Seca8g05538 1521 Gene3D Myosin VI head, motor domain, U50 subdomain 313 613 - -
Seca8g05538 1521 FunFam Myosin XI D 747 796 - -
Seca8g05538 1521 ProSiteProfiles IQ motif profile. 770 799 IPR000048 GO:0005515
Seca8g05538 1521 ProSiteProfiles Dilute domain profile. 1167 1467 IPR002710 -
Seca8g05538 1521 Gene3D - 678 745 - -
Seca8g05538 1521 Coils Coil 889 962 - -
Seca8g05538 1521 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca8g05538 1521 Coils Coil 984 1060 - -
Seca8g05538 1521 Pfam Myosin head (motor domain) 64 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05538 1521 SMART DIL_2 1342 1449 IPR002710 -
Seca8g05538 1521 FunFam Myosin heavy chain 253 308 - -
Seca8g05538 1521 ProSiteProfiles IQ motif profile. 795 824 IPR000048 GO:0005515
Seca8g05538 1521 FunFam unconventional myosin-Va 797 845 - -
Seca8g05538 1521 ProSiteProfiles IQ motif profile. 866 895 IPR000048 GO:0005515
Seca8g05538 1521 CDD MYSc_Myo11 76 732 IPR036018 -
Seca8g05538 1521 Gene3D Kinesin motor domain 65 674 IPR036961 -
Seca8g05538 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 799 895 IPR027417 -
Seca8g05538 1521 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05538 1521 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05538 1521 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05538 1521 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05538 1521 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05538 1521 Gene3D - 440 635 - -
Seca8g05538 1521 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Seca8g05538 1521 Pfam IQ calmodulin-binding motif 844 863 IPR000048 GO:0005515
Seca8g05538 1521 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515
Seca8g05538 1521 Pfam IQ calmodulin-binding motif 749 767 IPR000048 GO:0005515
Seca8g05538 1521 Pfam IQ calmodulin-binding motif 868 887 IPR000048 GO:0005515
Seca8g05538 1521 Pfam IQ calmodulin-binding motif 773 790 IPR000048 GO:0005515
Seca8g05538 1521 CDD MyosinXI_CBD 1118 1490 IPR037975 GO:0007015
Seca8g05538 1521 ProSiteProfiles IQ motif profile. 843 872 IPR000048 GO:0005515
Seca8g05538 1521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 797 IPR027417 -
Seca8g05538 1521 ProSiteProfiles IQ motif profile. 818 847 IPR000048 GO:0005515
Seca8g05538 1521 FunFam unconventional myosin-Va 846 893 - -
Seca8g05538 1521 ProSiteProfiles Myosin motor domain profile. 62 744 IPR001609 GO:0003774|GO:0005524|GO:0016459
Seca8g05538 1521 SMART iq_5 769 791 IPR000048 GO:0005515
Seca8g05538 1521 SMART iq_5 794 816 IPR000048 GO:0005515
Seca8g05538 1521 SMART iq_5 865 887 IPR000048 GO:0005515
Seca8g05538 1521 SMART iq_5 746 768 IPR000048 GO:0005515
Seca8g05538 1521 SMART iq_5 842 864 IPR000048 GO:0005515
Seca8g05538 1521 SMART iq_5 817 839 IPR000048 GO:0005515
Seca8g05538 1521 Pfam DIL domain 1343 1446 IPR002710 -
Seca8g05538 1521 SMART MYSc_2a 57 745 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05538 Seca-Chr8 146775852 146796786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05538 1 1520 Myosins gene family AT5G43900 75.524 0.0 2371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05538 K10357 - gmx:100791070 2776.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05538 8 146775852 146796786 Seca8g05538 8 146775852 146796786 ECH
Seca8g05538 8 146775852 146796786 Seca8g05538 8 146775852 146796786 PCT
Seca8g06255 8 156694136 156708370 Seca8g05538 8 146775852 146796786 PCT