Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05534 ATGGGAGAGGTGAAGTTACTGGGATCTTGGGCTAGTGGATACGTTTACAGGATCAAATGGGCTTTAAAACTGAAGGGTGTGACATATGAGTTTGTGGAGGAGGATTTAGCTCACAAGAGTGATTTGCTATTGCAGTATAACCCGGTTTACAAAAAGGTTCCAGTCCTTGTTCACAATGGAAAGCCAATCTCTGAATCCACTGTTATCCTTGAATACATAGAGGAAACATGGCCACAGGCACCTTTGCTTCCGAAAGACCCATATGAGAGGGCTGTGGTACGCTTCTGGGTCAATTTTGCAGAGGAAAAGGTAAGCACTTCGATCAAGTCATTCTTTGTGTCTGTTGGAGAAGAGCTTCAGAAGGCAACACAGGAAGTTAGAGAAGTGTTCAAAATATTAGAAGAAGCCATTGGGGACAAGAAATATTTTGGTGGTGATGAAATTGGACTTTTAGACATTAACTTGGGATGGATAGCCTTGTTATTTGGAGTTGGAGTCCTTGAAGAAGTTGTTGGTGTTGAAGTGCTGGTTGTTAATGATTTCCCTCGCTTGTTTACTTGGATTCAGAACTTCAGGGAGCACCCTGCTATCAAAGCTATCCTTCCAAGTCACCAAGAGTTCTTTGCTTATTACAAGAAAAGGAGGGAGATTATTGTTGCATCCAAAACGGAATAA 675 0.4193 MGEVKLLGSWASGYVYRIKWALKLKGVTYEFVEEDLAHKSDLLLQYNPVYKKVPVLVHNGKPISESTVILEYIEETWPQAPLLPKDPYERAVVRFWVNFAEEKVSTSIKSFFVSVGEELQKATQEVREVFKILEEAIGDKKYFGGDEIGLLDINLGWIALLFGVGVLEEVVGVEVLVVNDFPRLFTWIQNFREHPAIKAILPSHQEFFAYYKKRREIIVASKTE. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05534 224 SUPERFAMILY GST C-terminal domain-like 75 218 IPR036282 -
Seca8g05534 224 Gene3D Glutaredoxin 1 82 - -
Seca8g05534 224 FunFam Tau class glutathione S-transferase 1 85 - -
Seca8g05534 224 CDD GST_N_Tau 4 77 - -
Seca8g05534 224 CDD GST_C_Tau 87 214 IPR045074 GO:0004364|GO:0006749
Seca8g05534 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 206 IPR045073 -
Seca8g05534 224 FunFam Tau class glutathione S-transferase 83 221 - -
Seca8g05534 224 SFLD Glutathione Transferase (cytosolic) 1 221 IPR040079 -
Seca8g05534 224 Pfam Glutathione S-transferase, C-terminal domain 117 195 IPR004046 -
Seca8g05534 224 Gene3D - 83 222 - -
Seca8g05534 224 Pfam Glutathione S-transferase, N-terminal domain 4 74 IPR004045 -
Seca8g05534 224 SUPERFAMILY Thioredoxin-like 4 103 IPR036249 -
Seca8g05534 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Seca8g05534 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 211 IPR010987 -
Seca8g05534 224 SFLD Main.3: Omega- and Tau-like 1 221 IPR045073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05534 Seca-Chr8 146697441 146698799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05534 3 216 Glutathione S-transferase Gene Family AT2G29420 45.794 4.70e-64 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05534 K00799 - gmx:100500361 316.235