Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05520 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGACGAAGACGAAGAATATCCAATACACAACTCAAAGAAACCCTCCATGCAAAACGACGAGATCATGGAACTATTATGGCAAAACGGTCAGGTCGTGATGCAAAGCCAAAACCAACGACCATTCAGAAAACCGCCACCGCCGGCAATCAACACCGGCGACGGCATGATTCCGGCGAGGGAGATTCCGTCCTCAGAAGCACCAGAAAACTACAGTAACCAACACCTGTTCATGCAAGAAGATGAAATGGCTTCCTGGCTTCACGATTCAATCCACGAAGATCCTTCCTTCGATCATAACGATTTCTGCGCAGACATCCTCTGCCATCCTCCGCCACCGCCACCCGGTCAGAATCACAACAGTGCCATGCAAGCTCTCGTCCGGCAGCCTCCGAGGCCGCCGGCACCTCGACCTCCGATTCCGCCGGCGAGGAGGCCGGAGCAGACGCCGAGTAGGATTCACAATTTCGCTCACTTCTCCAAGCTCAACAATGCTAGGGCTGAACCGGGACCGTCGTCGAGTTCCAAGGCCACGGCGGTGCGGGAATCGACGGTGGTGGATTCGTGCGAAACGCCGATCACAGCGGCGACGGCGGCTGCAAAGGCGGCTGCGGTTTCCAAGCTCTCGGAGACTGTCAGGAGCTCAGCAGATACCGGCCGCGGGAGCATGAGCGCCGCCGGAAAAGCAGCGTCGGCCGGTGGAAGGGAGACGGCGACGTATGACATGACGGTGACGTCATCACCTGGCGGTTCGAGCGGGAGTGGTGAACAAGGTCTGAGGGAACCGGGAGTGGACCGGAAGAGGAAAGGCCGGGAACCGGAGGAATCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCTCCGGAGGCAAAAAAACAAGCCCATGGTTCTACATCTACAAAGAGGTCTCGTGCTGCAGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAGATGCGAGCTTTGCAAGAACTTATACCTCGGTGTAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTAAAGTCACTGCAATTACAAGTCCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAGTCCAGCAGTATATGCCGTCAATGGGAATGGGGATTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGGCCAGTAATGCCATTTCCCAATATGTTAGCTAATTCGGCTTTGCCAACAGCAAGTGCAGCTGCTCATTTGGGACCACGGTTCCCTATGCCTCCTTTCCATATACCCCATGTTCCTACACCTGATTCATCCAGAATGCAAGCAGCAAATCAGTCAGATAATATGCTTAATTCACTTGGTGCACTGGCTCCAGATCAATCACGTATCCCCAACTTCACTGATCCTTATCAGCAATACCTAGGTCCCCACCAGGTGCAGCAGTTACAGTTAATGCAGGCAATGAACCAACAAAATGTCAGCAAGCCAAGTACTAGTAGGGGCCAAGAGAATCCACAGAAACATCAGTCAGAAGAAACATGA 1581 0.5174 MNHCVPDFEIQMDEDEEYPIHNSKKPSMQNDEIMELLWQNGQVVMQSQNQRPFRKPPPPAINTGDGMIPAREIPSSEAPENYSNQHLFMQEDEMASWLHDSIHEDPSFDHNDFCADILCHPPPPPPGQNHNSAMQALVRQPPRPPAPRPPIPPARRPEQTPSRIHNFAHFSKLNNARAEPGPSSSSKATAVRESTVVDSCETPITAATAAAKAAAVSKLSETVRSSADTGRGSMSAAGKAASAGGRETATYDMTVTSSPGGSSGSGEQGLREPGVDRKRKGREPEESEFQSEDVDFESPEAKKQAHGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGVQQYMPSMGMGIGMGMGMEMGMNRPVMPFPNMLANSALPTASAAAHLGPRFPMPPFHIPHVPTPDSSRMQAANQSDNMLNSLGALAPDQSRIPNFTDPYQQYLGPHQVQQLQLMQAMNQQNVSKPSTSRGQENPQKHQSEET. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05520 526 Gene3D - 310 373 IPR036638 GO:0046983
Seca8g05520 526 MobiDBLite consensus disorder prediction 224 330 - -
Seca8g05520 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 393 IPR036638 GO:0046983
Seca8g05520 526 SMART finulus 321 370 IPR011598 GO:0046983
Seca8g05520 526 MobiDBLite consensus disorder prediction 497 526 - -
Seca8g05520 526 MobiDBLite consensus disorder prediction 138 160 - -
Seca8g05520 526 MobiDBLite consensus disorder prediction 249 265 - -
Seca8g05520 526 MobiDBLite consensus disorder prediction 497 517 - -
Seca8g05520 526 FunFam Basic helix-loop-helix transcription factor 310 373 - -
Seca8g05520 526 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 364 IPR011598 GO:0046983
Seca8g05520 526 Pfam Helix-loop-helix DNA-binding domain 319 365 IPR011598 GO:0046983
Seca8g05520 526 PANTHER TRANSCRIPTION FACTOR PIF3 20 505 IPR044273 GO:0003700|GO:0006355
Seca8g05520 526 CDD bHLH_AtPIF_like 315 378 IPR047265 -
Seca8g05520 526 MobiDBLite consensus disorder prediction 271 287 - -
Seca8g05520 526 MobiDBLite consensus disorder prediction 140 157 - -
Seca8g05520 526 MobiDBLite consensus disorder prediction 49 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05520 Seca-Chr8 146558300 146563809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05520 1 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.386 3.77e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g05520 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05520 - - gmx:100788491 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05520 8 146558300 146563809 Seca8g05520 8 146558300 146563809 ECH
Seca8g05520 8 146558300 146563809 Seca2g04484 2 130470495 130476199 PCT