Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05507 ATGATCAAGGACCTTGAAGCAGAGGCTTTGTTTTTCACTGCTACAGCTTCTGAAGCAGCGGAGGGTCTTGTGGAGATAAGGGAAGATTATGTGGAGGAAGAATCTAATGAAGGGGAATCTAATTCAGTTGCTGCTCCTGCTGAATTTCCTGATCATCCACATAGAGGCTTTGAGACAGTCACATATATGTTGCAGGTGGGTGACTTGGCAGGAGTTGTGGTTGGAATGGCTATAAATTGA 240 0.4458 MIKDLEAEALFFTATASEAAEGLVEIREDYVEEESNEGESNSVAAPAEFPDHPHRGFETVTYMLQVGDLAGVVVGMAIN. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05507 79 Gene3D Jelly Rolls 17 71 IPR014710 -
Seca8g05507 79 PANTHER RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN NNX3 1 45 - -
Seca8g05507 79 SUPERFAMILY RmlC-like cupins 43 65 IPR011051 -
Seca8g05507 79 Pfam Pirin 30 65 IPR003829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05507 Seca-Chr8 146352379 146356184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05507 42 67 Calmodulin-binding Proteins AT3G59220 73.077 6.53e-08 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05507 - - gmx:100781544 62.3882