Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05502 ATGGCGGCATCGCGGCGGCTCCGGGAGCTGCAATCGCAACCGGGGAACAAGATCTGCGTCGATTGCTCCCAGAAGAACCCGCAATGGGCGTCGGTGTCGTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGTGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAGGCTGGAGGCAATGACAACCTCAATGCCTTCCTCGCTCGCTATTCAATTCCCAAGGAAACCGACATCGTCACCAAGTACAACACCAACGCCGCCTCCGTTTACCGTGACCGGATCCAGGCCATCGCCGAGGGCCGTCCCTGGCGCGATCCGCCCGTTGTCAAGGAGAATCTATCCGCAGGCGGCAAGGGGAAGCCGCCGCTGACGCAGAATCGACGGAATAATGATTCCGGCTGGGACGATTGGGGTAATGACGGCGGTGTCGATATCAGGAGCAAGTCGACCGGGGACTTCAGGAACTTGAACGGTGGCAACGGCGGAGCGCCGGCGAGGTCGAGGTCGACGGAGGATATATATACGCGGTCGCAGCTGGAGGCTTCCGCGGCGAATAAGGAGAGCTTCTTCGCGAGGAAGATGGTGGAGAATGAGTCGCGACCCGAAGGGGTTCCACCGTCGCAGGGTGGGAAGTACGTTGGGTTCGGATCGAGCCCCGCGCCTTCGCAGAGGAGCAATCCGCAAAACGACTATTTCTCTGTCGTTTCTCAGGGGATTGGCAAATTGTCATTGGTTGCTGCCTCTGCGGCTCATTCTGCTGCTAATGTTGTTCAGGCAGGCACAAAAGAGATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAATGAAACAGTCAATGTTGTCACTCAAAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAAAGGGGTTATGGCTTTGGCTTCACAGAAGGTTGAGGAGTACACCCGAGATAACCCAAATTGGAAGGCGGATAACTGGCAACAGAACGAGAATGGTAGAAATGGTTACTATCAGGATTTCAATCAAGAGAACAAAGGCTGGAATTCTTCTACCGGAAGAGAACAATCTTCATCAGGGCAATTTAAAACTCATACCTCAAGCTCTTGGGACGATTGGGACCACAAAGATAGTAGGAAAGAGGAACCAACTAAAGGATCAACTCATTCATCTGCTGGGCAGTTTGGTACTTACAATTCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCACCTAAAGGATCGGCTCCCCATAATAATGATGGTGGTTGGGCTGGCTGGGATAATGCCAAAGAAGATGGATTTGATAATTTTTATGAAGGTGCATCTAACAAGAAAGCTGTTGGTCATAATGGAAAATCAGATGCCTCTTGGACAGGGGGAGGCTTTCTCTAA 1455 0.521 MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDNLNAFLARYSIPKETDIVTKYNTNAASVYRDRIQAIAEGRPWRDPPVVKENLSAGGKGKPPLTQNRRNNDSGWDDWGNDGGVDIRSKSTGDFRNLNGGNGGAPARSRSTEDIYTRSQLEASAANKESFFARKMVENESRPEGVPPSQGGKYVGFGSSPAPSQRSNPQNDYFSVVSQGIGKLSLVAASAAHSAANVVQAGTKEITSKVKEGGYDQKVNETVNVVTQKTSEIGQRTWGIMKGVMALASQKVEEYTRDNPNWKADNWQQNENGRNGYYQDFNQENKGWNSSTGREQSSSGQFKTHTSSSWDDWDHKDSRKEEPTKGSTHSSAGQFGTYNSSSWDDWDHKDSRKEEPPKGSAPHNNDGGWAGWDNAKEDGFDNFYEGASNKKAVGHNGKSDASWTGGGFL. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05502 484 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Seca8g05502 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 405 IPR044519 GO:0005096|GO:0016192
Seca8g05502 484 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Seca8g05502 484 MobiDBLite consensus disorder prediction 213 246 - -
Seca8g05502 484 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Seca8g05502 484 MobiDBLite consensus disorder prediction 336 382 - -
Seca8g05502 484 MobiDBLite consensus disorder prediction 402 417 - -
Seca8g05502 484 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Seca8g05502 484 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Seca8g05502 484 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Seca8g05502 484 MobiDBLite consensus disorder prediction 121 189 - -
Seca8g05502 484 MobiDBLite consensus disorder prediction 383 401 - -
Seca8g05502 484 MobiDBLite consensus disorder prediction 334 484 - -
Seca8g05502 484 MobiDBLite consensus disorder prediction 418 435 - -
Seca8g05502 484 CDD ArfGap_ArfGap1 3 117 - -
Seca8g05502 484 Pfam Putative GTPase activating protein for Arf 5 103 IPR001164 GO:0005096
Seca8g05502 484 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Seca8g05502 484 SUPERFAMILY ArfGap/RecO-like zinc finger 5 112 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05502 Seca-Chr8 146269291 146272948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05502 5 83 C2H2 Transcription Factor Family AT4G05330 51.250 2.22e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05502 K12492 - gmx:100806519 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05502 8 146269291 146272948 Seca8g05502 8 146269291 146272948 ECH