Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05493 ATGTATGTGAATCAGACAACTGATGAGTGGAAACGTGTGCTGAAAAGAAGTGCTGATGGTTGCACTAAGAGAAGGGACAATGATTTGCATAGGTTACTTTTTATGCCTAATGGACTACCGGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAAGGAAATGGTATAGTCTGTGGTTGTTGTGACATAGAGATAAGCCCTTCTCAGTTTGAAGCCCATGCTGGAATGGCTGCTAGACGTCAACCTTATCGCCACATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTGTCTTTGGCAAATGGTCAAAACCTTATGACGGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGCCCTAGGGCCTTTCATGCATCCTGCTTGGGTTTACAGTGTGTTCCAGATAATAGTTGGCGTTGTCTAAATTGTAGAGATAATGCTGGTAATGGAAGAGAATCTTCCATTGCAAGGCCAATCATGATACGGTTGACACGGGTTGATAAAACACCAGATTATGAAATGGGCGGATGTGTTGTTTGCAGGGAGCATGATTTCAGTGTTGCTAAGTTTGATGAGCGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCACGTAGGTTGCTTGCGGGAGATTGGGCTGTGTGAGCTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGAGGACTGCAATCGAATATATGTGGCTCTACAGAATTCTGTTTCTGCTGGAGCAGAAATTATACCATCTTCCTTGTCCGAACTAATAATCAGGAAGCATGAGGAGAGGGGATTATGTACTTATGGAGGCATGAATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCCGAACATTTACCGTTACTTTCACGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCAATATCTGGTCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGTCAAGAATTTGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCCATTGTAGTATCTGCTGGGCTTCTTAGGATTTTTGGCCGTAATGTTGCTGAGCTTCCTCTGGTAGCTACAAGCAGAGAACATCAAGGAAAAGGTTATTTTCAAGTGTTATTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAATGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGATGCTGAGTCAATTTGGACTAAGAAATTAGGCTTCCGTAAGATGAGTGAAGATCAGTTATCCAAATATCTTAGAGAGGTGCAGCTCACCCTATTCAACAAAACTTCAGTGCTGGAGAAAACAGTGTTTACTTCGCGCGGTTCTTCTTTACGGATCCGTGCTGTATCGACCACGGAAAATCAAGCTTCTAGTTACATTCCGGCTGCTCCAATTTTTCTCCCCGAAGGACCTTGGAAGCAGATTCCAGGTGGAGTTACTGCTGCAGAGGGATTCAAAGCTGCAGGAATATATGGAGGGTTGCGTGCTGCAGGAGAGAAGCCTGATCTTGCTCTTGTCACGTGCGATGTTGATGCCATATCTGCAGGGTCGTTTACAATTAATGTGGTTGCCGCCGCACCTGTGTTATACTGCAAAAGGACATTAGACATTTCAAACACTGCACGTGCTGTGTTAACTAATGCAGGTCAGGCAAATGCAGCTACGGGTGAAGGAGGTTACCAAGATGTGATAGAATGTGTGGAAAGCCTTGCTGCGCTCCTGAAAGTGAAACCAAAAGAAGTGTTAGTTGAATCCACTGGTGTGATTGGTCAAAGAATAAAGAAGGGGGCACTTTTAAACTCACTTCCTACACTAGTGAATTCACTATCATCTTCAGTTGAGGGGGCAGATTCGGCAGCAGTGGCAATTACCACAACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGGTTGGAGGGACTAAAGTCAGAGTTGGGGGAATGGCAAAAGGTTCTGGAATGATCCACCCAAATATGGCTACCATGCTTGGGGTAATAACAACTGATGCTCGGGTAACCAGTGATGTTTGGAGGAAGATGGTGCAGGTTGCTGTTAATCGAAGTTTCAACCAGATAACTGTAGATGGAGATACCAGTACTAATGATACTGTTATTGCTTTGGCTAGTGGATTGTCTGGGCTAGGCTGCATATCTTCTCTGACCAGTGACGAGGCTGTTCAACTTCAGGCATGCCTAGATGCGGTAATGCAAGGTCTTGCCAAATCTATAGCTTGGGATGGAGAGGGAGCAACATGCCTCATTGAGGTCAGTGTGACTGGTGCAAATAGTGAAACTGAAGCTGCAAAAGTGGCACGTTCAGTTGCATCATCTTCACTTGTAAAGGCTGCTGTATATGGTAGAGACCCCAATTGGGGACGCATTGCTGCTGCAGCTGGTTACTCAGGGGTTTCTTTCCACCAAAATTTACTTAGGGTGGAGCTGGGGGATATTTTGCTAATGGATGGCGGGGAACCACAGTTATTTGACCGGGGTGCGGCTAGTAATTATCTTAGAAAGGCTGGGGAGACTCACGATACAGTTAGAATTCAGATATCCGTCGGCAATGGACCAGGACGTGGACAAGCATGGGGTTGTGATTTGAGCTACGATTATGTCAAAATAAATGCTGAGTACACATCATAA 2727 0.4411 MYVNQTTDEWKRVLKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLMTGDSDDMCAICGDGGDLILCNGCPRAFHASCLGLQCVPDNSWRCLNCRDNAGNGRESSIARPIMIRLTRVDKTPDYEMGGCVVCREHDFSVAKFDERTVIICDQCEKEYHVGCLREIGLCELEELPKDKWFCCEDCNRIYVALQNSVSAGAEIIPSSLSELIIRKHEERGLCTYGGMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGRNVAELPLVATSREHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKYLREVQLTLFNKTSVLEKTVFTSRGSSLRIRAVSTTENQASSYIPAAPIFLPEGPWKQIPGGVTAAEGFKAAGIYGGLRAAGEKPDLALVTCDVDAISAGSFTINVVAAAPVLYCKRTLDISNTARAVLTNAGQANAATGEGGYQDVIECVESLAALLKVKPKEVLVESTGVIGQRIKKGALLNSLPTLVNSLSSSVEGADSAAVAITTTDLVSKSVAIESLVGGTKVRVGGMAKGSGMIHPNMATMLGVITTDARVTSDVWRKMVQVAVNRSFNQITVDGDTSTNDTVIALASGLSGLGCISSLTSDEAVQLQACLDAVMQGLAKSIAWDGEGATCLIEVSVTGANSETEAAKVARSVASSSLVKAAVYGRDPNWGRIAAAAGYSGVSFHQNLLRVELGDILLMDGGEPQLFDRGAASNYLRKAGETHDTVRIQISVGNGPGRGQAWGCDLSYDYVKINAEYTS. 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05493 908 Gene3D - 294 464 - -
Seca8g05493 908 FunFam PHD finger family protein 295 462 - -
Seca8g05493 908 FunFam Arginine biosynthesis bifunctional protein ArgJ, chloroplastic 776 908 - -
Seca8g05493 908 Hamap Arginine biosynthesis bifunctional protein ArgJ [argJ]. 499 908 IPR002813 GO:0004358|GO:0006526
Seca8g05493 908 FunFam Arginine biosynthesis bifunctional protein ArgJ, chloroplastic 502 775 - -
Seca8g05493 908 SUPERFAMILY DmpA/ArgJ-like 510 905 IPR016117 -
Seca8g05493 908 Pfam ArgJ family 514 908 IPR002813 GO:0004358|GO:0006526
Seca8g05493 908 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 305 455 IPR000182 GO:0016747
Seca8g05493 908 Gene3D - 502 775 - -
Seca8g05493 908 CDD OAT 509 908 IPR002813 GO:0004358|GO:0006526
Seca8g05493 908 FunFam PHD zinc finger protein 195 255 - -
Seca8g05493 908 ProSitePatterns Zinc finger PHD-type signature. 197 252 IPR019786 -
Seca8g05493 908 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 111 189 - -
Seca8g05493 908 ProSitePatterns Zinc finger PHD-type signature. 124 163 IPR019786 -
Seca8g05493 908 SMART PHD_3 123 164 IPR001965 -
Seca8g05493 908 SMART PHD_3 196 253 IPR001965 -
Seca8g05493 908 ProSiteProfiles Zinc finger PHD-type profile. 194 255 IPR019787 -
Seca8g05493 908 ProSiteProfiles Zinc finger PHD-type profile. 121 166 IPR019787 -
Seca8g05493 908 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 352 438 IPR016181 -
Seca8g05493 908 Gene3D - 776 908 IPR042195 -
Seca8g05493 908 NCBIfam bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 502 908 IPR002813 GO:0004358|GO:0006526
Seca8g05493 908 SUPERFAMILY FYVE/PHD zinc finger 192 250 IPR011011 -
Seca8g05493 908 SUPERFAMILY FYVE/PHD zinc finger 119 167 IPR011011 -
Seca8g05493 908 CDD PHD1_AIRE 123 163 - -
Seca8g05493 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
Seca8g05493 908 PANTHER AUTOIMMUNE REGULATOR 15 462 - -
Seca8g05493 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 255 IPR013083 -
Seca8g05493 908 Pfam Tify domain binding domain 57 106 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05493 Seca-Chr8 146182108 146202377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05493 15 463 PHD Transcription Factor Family AT3G53680 68.062 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05493 - - gmx:100808999 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05493 8 146182108 146202377 Seca8g05493 8 146182108 146202377 ECH