Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05486 ATGATGGAGATGAACCATCAAATACAGAATTTGTTAGGAAAAGCAAAACCGTTCATAGTTGTCGTGTTTATGCAGTTTGGATACGCAATTATGGATATTTTATCCAAAGCTGCAATGAACAAAGGGATGAGCAATTATGTATTTGTTGTGTACCGTCATGCTGTTGCATTCTTAGTCATTGCCCCTTTTGCACTGTATTTTGACAAGAAAGTAAGGCCAAAGATGACATTTTCAATCTTCATGAAGATAGTGGCCCTCAGCGTGCTAGAGCCAGTTATTGATCAGAATTTGTACTTTTTGGGGATGAAGTACACAACAGCAACCTTTGCCGTTGCAATGACCAATATCCTTCCAGCCATTACCTTTATCTTGGCTTGCTTTCTTAGGCTTGAGAAGATAAAAATAAAAAGTATACGTAGCCAAGCAAAGGTAGTGGGAACTGTAGCAACTGTTTCAGGTGCCATGGTGATGACACTGCTGAAAGGTCCAGTGCTTTTTGGGACACATGGAGACAATAACCTCAACCAGTATAACGGGATAAGTACTAAACATACAATAGCAGGATCCGTGATGATTACAATTGGATGCTTTTGTTGGGCTTGTTTCGTGATCCTCCAAGCTATTACCCTTAAAACCTACCCTGCTGCGCTCTCTCTTGCCTCATTGATATGCCTATTTGGCACAATTGAAGGTGCCGTGGTGGCTGTGATTATGGAAAGGGGAAACCCTTCAGTTTGGTCTATAAATTGGGATATGAGACTGCTGTCTGCTGTCTACACTGGCATAGTCTGCTCAGGACTGGGTTACTACTTGCAAGGAGTAGTGATGAAAACTAGAGGCCCAGTCTTCGTAACATCCTTTAGTCCTTTATGCATGGTTATTGTGGCTATCATGGGCTACTTCATTCTCTCCGAGCAAATATTCCTTGGAAGGTTGATCGGTGCTATTGTCATTTGTTTGGGCCTGTATTTTGTGATATGGGGTAAAAGCAAAGATTACAGCCCACAAAATCCAATTGTTCAAGAGCCTACATTGCCAGCTAAGCAAACTGCAAACGAGGGCAATGCTAAGAATGGTGAACATTGTCCTCAAGAGGTCATCACTATTCAGTAA 1113 0.4178 MMEMNHQIQNLLGKAKPFIVVVFMQFGYAIMDILSKAAMNKGMSNYVFVVYRHAVAFLVIAPFALYFDKKVRPKMTFSIFMKIVALSVLEPVIDQNLYFLGMKYTTATFAVAMTNILPAITFILACFLRLEKIKIKSIRSQAKVVGTVATVSGAMVMTLLKGPVLFGTHGDNNLNQYNGISTKHTIAGSVMITIGCFCWACFVILQAITLKTYPAALSLASLICLFGTIEGAVVAVIMERGNPSVWSINWDMRLLSAVYTGIVCSGLGYYLQGVVMKTRGPVFVTSFSPLCMVIVAIMGYFILSEQIFLGRLIGAIVICLGLYFVIWGKSKDYSPQNPIVQEPTLPAKQTANEGNAKNGEHCPQEVITIQ. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05486 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 330 - -
Seca8g05486 370 PANTHER WAT1-RELATED PROTEIN 16 333 IPR030184 GO:0016020|GO:0022857
Seca8g05486 370 Pfam EamA-like transporter family 19 156 IPR000620 GO:0016020
Seca8g05486 370 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020
Seca8g05486 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 51 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05486 Seca-Chr8 146109438 146113803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05486 9 370 Nodulin-like Gene Family AT2G37460 62.088 2.91e-161 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05486 - - gmx:100811147 572.007