Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05483 ATGGAGTTTGAGTGCAAGACATGTCACCGCAAATTCTCGTCGTTTCAAGCCTTAGGTGGCCACAGGGCTAGCCACAAAAAGCCAAAGCTTGAAGGAGAAGAAGCGAAATCAGAGGGGAATAAAGCGAAGATGCATGAGTGTTCTATTTGTGGACAGGTATTCTCTTTGGGACAGGCTCTTGGAGGACACATGAGAAGGCACAGGGCTGTTGCCATGAATGAAGATAAAGGGTTTTGTCCTATAAACCAAGCTATTGCAAAAGCACCAGTGTTGAAAAGATCGAATAGTAAGAGGATTATGTGCTTGGAATTGGACTTGAATTTGACACCTTTGGAAAATGACTTGAAGTTGTTGTTTGGGAAGAAGGCTCCTCAAGTCGATCTTTCTTTGAGTAGAGTAGGCATGAAGAGACAGAGAGATGAAGAAGTAATAGAGAGCATAGATTTGGCAAATTGTCTAATGCTACTTTCTCATCCCAAAGAAACTAGCAAACCCCAGAAACGATTCGGCCCTGTTGAATTTGAGTGCAGCACTTGCAACCGAAAGTTCTCTTCTTTTCAAGCCTTGGGTGGTCACAGGGCTAGTCACAAGAAGCCCAAACGTGATGGAGAAGATCTCACAGCACTGAAGTTGTTGGGGAATAATAATAATAATAATAAACCCAAAATGCATGAATGTTCCATTTGTGGTCAGGAGTTTTCTCTAGGACAAGCACTTGGAGGACACATGAGAAGGCACAGAATTGCCGTTAACGAAGAAGGGTTTTCTAATAATTCTATGAAGCAATTAGACGAGGTTGTTGTGAAAAGATCGAATAATAGTATTAGTAGGAGGGTTATGCGCTTGGACTTGAACTTAACGCCTTTGCAGAATGACTTTAAGTTATTGTTTGGAAACATGGCACCCAAACTTCATTCCTTTGTTTGA 927 0.4175 MEFECKTCHRKFSSFQALGGHRASHKKPKLEGEEAKSEGNKAKMHECSICGQVFSLGQALGGHMRRHRAVAMNEDKGFCPINQAIAKAPVLKRSNSKRIMCLELDLNLTPLENDLKLLFGKKAPQVDLSLSRVGMKRQRDEEVIESIDLANCLMLLSHPKETSKPQKRFGPVEFECSTCNRKFSSFQALGGHRASHKKPKRDGEDLTALKLLGNNNNNNKPKMHECSICGQEFSLGQALGGHMRRHRIAVNEEGFSNNSMKQLDEVVVKRSNNSISRRVMRLDLNLTPLQNDFKLLFGNMAPKLHSFV. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05483 308 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Seca8g05483 308 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Seca8g05483 308 SUPERFAMILY beta-beta-alpha zinc fingers 221 247 IPR036236 -
Seca8g05483 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Seca8g05483 308 Pfam C2H2-type zinc finger 174 199 - -
Seca8g05483 308 Pfam C2H2-type zinc finger 45 69 - -
Seca8g05483 308 Pfam C2H2-type zinc finger 3 28 - -
Seca8g05483 308 Pfam C2H2-type zinc finger 224 248 - -
Seca8g05483 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 246 IPR013087 -
Seca8g05483 308 ProSitePatterns Zinc finger C2H2 type domain signature. 5 25 IPR013087 -
Seca8g05483 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 3 30 IPR013087 -
Seca8g05483 308 SMART c2h2final6 45 67 IPR013087 -
Seca8g05483 308 SMART c2h2final6 3 25 IPR013087 -
Seca8g05483 308 SMART c2h2final6 174 196 IPR013087 -
Seca8g05483 308 SMART c2h2final6 224 246 IPR013087 -
Seca8g05483 308 Gene3D Classic Zinc Finger 1 67 - -
Seca8g05483 308 Gene3D Classic Zinc Finger 172 246 - -
Seca8g05483 308 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Seca8g05483 308 SUPERFAMILY beta-beta-alpha zinc fingers 43 196 IPR036236 -
Seca8g05483 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 67 IPR013087 -
Seca8g05483 308 PANTHER ZINC FINGER PROTEIN ZAT5 136 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05483 Seca-Chr8 146065181 146074009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05483 135 304 C2H2 Transcription Factor Family AT3G53600 44.022 1.17e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05483 zf-C2H2_6 3.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05483 - - aprc:113870747 397.897