Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05470 ATGGGTAACGGGCACGGACATGGCCATGGCCATCGCAAACACCGTAATTCTGTCCCTCACAACACGGTTCCTCCTCCCTATATATATGGTCCTAGTTCTCAGCCCCAGCCATCATCAACAATCCCAAACCAGAACGTGGTTGCTTCCAATTCCAACATTATGAACTCTTTGCCGTACGCCCACGTCGACTCCACTCTCCGTGCCCTCGCCACCCAGGCCGAGGGCTTTGGTCGCTTCGCAATCGGTGGACTTCACGGCCCCCTTTATCATGTCACCTCTCTTGCAGATGATGGACCAGGATCATTGCGTGACGCATGTCGCAGAAAAGAACCTTTATGGATTGTATTTGAGGTTTCAGGTACTATTCATCTTTCGTCGTATTTGAGTGTGTCGTCATACAAGACCATTGATGGAAGGGGCCAAAGGATTAAGCTCACTGGAAAAGGTTTGAGGCTGAAGGATTGTGAGCATGTAATAATTTGCAATTTAGTGTTAGAAGGAGGAAGAGGGCCTGATGTTGATGGCATTCAGATCAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGTCTAAGTGATTTTGATGATGGCTTGATAGATATCACTAGAGAAAGCACTGATATCACTATTTCAAGGTGTCACTTTGCTCAGCATGACAAAACAATGCTCATTGGGGCAGATCCCTCACATGTTGGTGATAGATGCATCAGGGTCACCATACACCATTGTTTTTTCAATGGTACTCGACAGAGGCATCCTCGTGTTAGATTTGGAAAAGTACATCTGTACAATAATTACACCAGAAACTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGCCAGAAGAAGGTGGCATTTAAGTATCTTACTGAGAAGGTTTGTCTAGTTCTTATGTTTAGTGGCCAAGTAATGTTTTAG 960 0.449 MGNGHGHGHGHRKHRNSVPHNTVPPPYIYGPSSQPQPSSTIPNQNVVASNSNIMNSLPYAHVDSTLRALATQAEGFGRFAIGGLHGPLYHVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKDCEHVIICNLVLEGGRGPDVDGIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFNGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKVCLVLMFSGQVMF. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05470 319 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Seca8g05470 319 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Seca8g05470 319 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Seca8g05470 319 SUPERFAMILY Pectin lyase-like 71 302 IPR011050 -
Seca8g05470 319 PANTHER PECTATE LYASE 18-RELATED 61 298 IPR045032 GO:0030570
Seca8g05470 319 SMART amb_all 99 297 IPR002022 -
Seca8g05470 319 Gene3D - 58 309 IPR012334 -
Seca8g05470 319 MobiDBLite consensus disorder prediction 1 18 - -
Seca8g05470 319 MobiDBLite consensus disorder prediction 1 41 - -
Seca8g05470 319 Pfam Pectate lyase 128 290 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05470 Seca-Chr8 145848582 145851689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05470 54 307 Polysaccharide Lyase AT3G09540 74.409 1.22e-140 400
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05470 8 145848582 145851689 Seca8g05470 8 145848582 145851689 ECH