Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05460 ATGGGGAAGGGAAGTCAGAATTGCGAGAAACCAGAAAACTCACATTCAGAACGAGAAATCTTCAAGGCGTGGTCTAGGAGTGTGAACGAATGCGAGGAGCATTTCAAGGTGAGTCTGAAGACGGGGTTGAGTTCTCACGAAGTGGAGAATCGGCGCCATATCTATGGTTCGAACGAGTTAGAGAAGCACGAGAACCAATCCATTTGGAGCCTTGTTCTCGATCAGTTCAACGACACTTTGGTTCGGATCCTCCTCGTCGCCGCCATCGTTTCCTTCGTCCTCGCCTGGCTCGACGGCGATGAAGGTGGCGACATGGAAATAACCGCCTTCGTGGAGCCTCTCGTGATATTCCTCATCCTGATCGTCAACGCCATCGTCGGCGTTTGGCAGGAGAGCAATGCCGAGAAGGCACTAGAAGCGCTGAAGGAGATTCAGTCGGAGCACGCCGCCGTCGTCCGCGGAGGAAAGTTGATCCCAAATTTGCCGGCGAAGGATCTCATTCCCGGCGATGTGGTGGAGCTTAAGGTCGGAGATAAGGTCCCTGCTGATATGCGTGTTGCGGAGTTGGTTAGTTCTACTCTGCGGTTGGAACAGGGCTCTCTCACTGGAGAGAGTGAAGCGGTAATTAAGACCTACAAGGCTGTTGATGAAGACGCCGATATTCTAGGCAAGAAGTGTATGCTTTTCGCAGGGACCACTGTTGTTAACGGACATTGCCTCTGTTTCGTTACTCACACTGGAATGGAAACAGAGATTGGTAAAGTGCATAAGCAGATACACGTGGCGGCGCTGAATGAGGAAGAAACACCGTTGAAGAAGAAGCTCAATGAGTTTGGAGAGATGTTAACACTGATAATTGGAGTTGTGTGTGCTTTGGTGTGGCTCATCAATGTGAAGTATTTTCTCACCTGGGAATACGAGGGTGGGTGGCCGAGGAACTTCAAGTTCTCGTTTGAGAAGTGCACATATTACTTTGAGATTGCTGTGGCATTGGCCGTGGCTGCTATTCCTGAAGGTTTGCCTGCGGTTATCACTGCTTGCTTGGCGCTAGGTACTCGCAAGATGGCTCAGAAGAATGCGCTTGTTCGGAAACTAACGAGTGTGGAAACGCTGGGTTGTACCACTGTGATTTGTTCGGATAAAACAGGGACGTTGACGACGAATCAGATGGCGGTGACGAAAATTGTGGCTGTTGGTGATAATGCAGATGCTCTGCAATTCTTTAAGGTGGAAGGGACTACTTACAATCCATCAGATGGTAAAATAGAGGACTGGTCAACGGGTCCATTGGATGCTAATCTTGAGATGATAGCCAAAATATGTGCAGTTTGTAATGATGCAGGGGTTACAGAGTCAGAGCAAAAGTTTGTGGCCCATGGAATTCCTACTGAAGCAGCCTTAAAGGTTCTGGTGGAGAAGATGGGCCTTCCTGAAGGAAAGGATGCATTTTCAGCAAATGGAAGAACCTTATTACGTAAGTTGAACCTTTTGGCTACTCATTCTGTCATAAATTATGGTTGTTGTGAATGGTGGAATGAACATGACCCTCGGATTGCTACTCTTGAGTTTGACCATGATAGGAAGTCAATGGGTGTTATTGTGGACTCTGGTCCAGGGAAAAGATCACTGCTGGTAAAGGGTGCTGTAGAAAATGTGTTGGAACGAAGCTCTAAAATTCAGTTGTATGACGGTTCTATTGTGAAGCTGGACAATAATGGTAGGAACCGTGTTTTGCAAGCTCTTCATGAAATGTCAACTGGTGCATTACGCTGTTTGGGATTTGCCTACAAGGATGAGCTCCCAATGTTTGAAAGCTATCGTGGTAATGATGATCATCCAGCACACCAGCTTTTGCTTAATCCTTCAAACTATTCATCAATCGAAAGTGAACTTATTTTTGTTGGTTTTGTTGGATTAAGGGATCCTCCTAGGGAAGAGGTATACCAAGCAATTGAGGACTGCAGAGCAGCTGGAATTCGTGTTTTGGTTATTACTGGAGACAACAAGGACACAGCAGAAGCTATATGCCGTGAAATAGGTGTATTTCGACCCAATGAAGACATTAGTTTGAGAAGCATAACAGGAAAAGAGTTTATGGAACTGCGTGATAAAAAAGCCCATCTGGCTCAAAATGGTGGGCTTTTGTTTTCAAGGGCTGAACCTAGGCACAAACAAGAAATTGTGCGGCTGCTCAAAGAGGATGGAGAGGTGGTGGCCATGACTGGTGATGGTGTTAATGATGCACCTGCCTTGAAGCTTGCTGATATTGGCATTGCAATGGGCATTACTGGGACTGAGGTGGCAAAGGAAGCTTCGGATATGGTCTTGGCTGATGATAATTTTAGTACAATTGTTGCTGCTGTTGGTGAAGGTAGATCTATCTACAATAACATGAAGGCTTTTATCAGGTATATGATCTCTTCCAATATTGGCGAGGTCGCTTCTATATTTCTAACGGCAGCCCTAGGTATTCCTGAAGGATTGCTACCTGTTCAGCTTCTTTGGGTCAATCTTGTTACAGATGGACCACCCGCAACAGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTAATTAACTTGTGGATTTTATTCCGCTATCTGGTTATTGGGATGTATGTTGGATTGGCTACAGTTGGTGTCTTTATAATATGGTATACCCATGGTTCCTTCTTGGGTATTAACCTTAGCGGGGATGGCCATACTCTTGTCACTTACTCCCAACTTAGCAACTGGGGTCAATGCTCCACATGGAATAATTTCACTGCTTCTCCCTTCACCGCTGGTGCTAGAGTTTTTTCTTTTGATAATGACCCCTGTGAATATTTCCAGGCTGGAAAGGTGAAAGCTATGACTCTCTCCCTCTCTGTGTTGGTAGCCATAGAAATGTTCAATTCTCTCAATGCCCTTTCTGAGGATGGAAGCCTTTTGACAATGCCTCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCCGTGTCATTTGGTCTTCACTTTTTGATCTTGTATGTGCCATTCTTAGCCCAAGTATTTGGCATTGTGCCCCTCAGCTTCAATGAATGGCTTTTGGTTTTGGTTGTTGCATTCCCTGTTGTTATAATTGACGAGATTCTGAAACTTGTGGGGAGGTGTACAAGTACAAGTAGGTCTCAAACATCTCCGACAAGAGCAAAGCAAAAATCAGAGTAG 3222 0.4565 MGKGSQNCEKPENSHSEREIFKAWSRSVNECEEHFKVSLKTGLSSHEVENRRHIYGSNELEKHENQSIWSLVLDQFNDTLVRILLVAAIVSFVLAWLDGDEGGDMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHAAVVRGGKLIPNLPAKDLIPGDVVELKVGDKVPADMRVAELVSSTLRLEQGSLTGESEAVIKTYKAVDEDADILGKKCMLFAGTTVVNGHCLCFVTHTGMETEIGKVHKQIHVAALNEEETPLKKKLNEFGEMLTLIIGVVCALVWLINVKYFLTWEYEGGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITACLALGTRKMAQKNALVRKLTSVETLGCTTVICSDKTGTLTTNQMAVTKIVAVGDNADALQFFKVEGTTYNPSDGKIEDWSTGPLDANLEMIAKICAVCNDAGVTESEQKFVAHGIPTEAALKVLVEKMGLPEGKDAFSANGRTLLRKLNLLATHSVINYGCCEWWNEHDPRIATLEFDHDRKSMGVIVDSGPGKRSLLVKGAVENVLERSSKIQLYDGSIVKLDNNGRNRVLQALHEMSTGALRCLGFAYKDELPMFESYRGNDDHPAHQLLLNPSNYSSIESELIFVGFVGLRDPPREEVYQAIEDCRAAGIRVLVITGDNKDTAEAICREIGVFRPNEDISLRSITGKEFMELRDKKAHLAQNGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLLPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGMYVGLATVGVFIIWYTHGSFLGINLSGDGHTLVTYSQLSNWGQCSTWNNFTASPFTAGARVFSFDNDPCEYFQAGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLVVAFPVVIIDEILKLVGRCTSTSRSQTSPTRAKQKSE. 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05460 1073 FunFam Calcium-transporting ATPase, putative 124 260 - -
Seca8g05460 1073 PRINTS P-type cation-transporting ATPase superfamily signature 635 646 - -
Seca8g05460 1073 PRINTS P-type cation-transporting ATPase superfamily signature 765 777 - -
Seca8g05460 1073 PRINTS P-type cation-transporting ATPase superfamily signature 741 760 - -
Seca8g05460 1073 PRINTS P-type cation-transporting ATPase superfamily signature 657 667 - -
Seca8g05460 1073 PRINTS P-type cation-transporting ATPase superfamily signature 378 392 - -
Seca8g05460 1073 PRINTS P-type cation-transporting ATPase superfamily signature 197 211 - -
Seca8g05460 1073 SFLD p-type atpase 359 793 IPR044492 -
Seca8g05460 1073 SUPERFAMILY Calcium ATPase, transduction domain A 148 258 IPR008250 -
Seca8g05460 1073 Gene3D - 74 1054 - -
Seca8g05460 1073 NCBIfam HAD-IC family P-type ATPase 715 822 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca8g05460 1073 NCBIfam HAD-IC family P-type ATPase 317 400 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca8g05460 1073 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 388 642 - -
Seca8g05460 1073 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 249 398 - -
Seca8g05460 1073 SMART Cation_ATPase_N_a_2 22 96 IPR004014 -
Seca8g05460 1073 SFLD Haloacid Dehalogenase 359 793 - -
Seca8g05460 1073 SUPERFAMILY Calcium ATPase, transmembrane domain M 22 1055 IPR023298 -
Seca8g05460 1073 Gene3D - 375 786 IPR023214 -
Seca8g05460 1073 PANTHER CALCIUM-TRANSPORTING ATPASE 24 1062 - -
Seca8g05460 1073 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 805 1059 - -
Seca8g05460 1073 FunFam Calcium-transporting P-type ATPase, putative 637 786 - -
Seca8g05460 1073 Gene3D - 388 642 IPR023299 GO:0000166
Seca8g05460 1073 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 385 639 IPR023299 GO:0000166
Seca8g05460 1073 Gene3D - 41 262 - -
Seca8g05460 1073 Pfam haloacid dehalogenase-like hydrolase 375 755 - -
Seca8g05460 1073 Pfam E1-E2 ATPase 144 358 - -
Seca8g05460 1073 Pfam Cation transporter/ATPase, N-terminus 24 91 IPR004014 -
Seca8g05460 1073 Pfam Cation transporting ATPase, C-terminus 826 1052 IPR006068 -
Seca8g05460 1073 ProSitePatterns E1-E2 ATPases phosphorylation site. 380 386 IPR018303 -
Seca8g05460 1073 SUPERFAMILY HAD-like 376 845 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05460 Seca-Chr8 145677814 145683646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05460 1 1073 Primary Pumps ATPases(2) AT1G07670 75.743 0.0 1672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05460 K01537 - gmx:100812151 1782.3