Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05446 ATGATCCCACAAATGGAAGAAACAACAGCAACCATCATGGCTGCACTCTCCACCCTCACTCCTTCCCACCTCACAGATCTCACACACTCCATTCTCTCATCCACCCGCCACCACCATCGCCGCCTCTCCTTCCTCCTCTCTTCCCCAACTCTCTTTTCTCTTACCCTTCACCATCTCCACACTCTCTCTCTTCCTCAAAAGACCCTCCTCATTGCCCGCCACCTCCTCTCTTCCCTCCACCGCCTTACCCGCCACTTCCAACCCAACACCTCACCGCCTCTCCCGCCGCCCTTATCCACCGCCATGAGAGAGCGTGAACTCGACGCCGTTTTGCTCCTCCTCCTCTTCTGCGAGACCCAAAACCACAACCCAGAAGCCTTCGATGCACCCTTCTCCGATTGGAGGCTGAACCTCAGCAACCTCTTCTCCGATACATTGTTGACGCTTTCTTGTTCCTCTGCACCCGTTGGAGCGTGTGCCGGAACAATCTTGATTCCCTTCGTTGAGACGGTTAGCCGATGCTGGAGACTCTTCGGTTCTATGGGTTTCGCTGGCGGAGGAGGAGGGAAGGAATTGGGGGAGGTGGCGGCATCGGCGGCGGCGGTGGTGTCGCTGCCGGCGGTGGAGGTTACGGCGGTTGGGAAAGAGTGCGTGATTTGCAAAGAGGAGATGCGAGTAGGGAGGGACGTGTGTGAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGCATTTTGCCGTGGTTGGGAAAGAGGAACACGTGTCCTTGCTGCAGGTACCAGTTACCGTCCGATGATGTGTTCGGAGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATGGGTGTAAGAGAATAG 855 0.5567 MIPQMEETTATIMAALSTLTPSHLTDLTHSILSSTRHHHRRLSFLLSSPTLFSLTLHHLHTLSLPQKTLLIARHLLSSLHRLTRHFQPNTSPPLPPPLSTAMRERELDAVLLLLLFCETQNHNPEAFDAPFSDWRLNLSNLFSDTLLTLSCSSAPVGACAGTILIPFVETVSRCWRLFGSMGFAGGGGGKELGEVAASAAAVVSLPAVEVTAVGKECVICKEEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRYQLPSDDVFGEIQRLWEVLVKMGVRE. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05446 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 269 IPR013083 -
Seca8g05446 284 SMART ring_2 217 257 IPR001841 -
Seca8g05446 284 SUPERFAMILY RING/U-box 214 264 - -
Seca8g05446 284 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Seca8g05446 284 CDD RING-H2_PA-TM-RING 216 258 - -
Seca8g05446 284 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 124 262 - -
Seca8g05446 284 Pfam Ring finger domain 215 258 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05446 Seca-Chr8 145497682 145498536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05446 6 279 C3H Transcription Factor Family AT5G02750 51.237 9.00e-83 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05446 - - cam:101509295 379.793