Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05444 ATGGTTAGATCATGCTGGAAACCAGCTACAGATGGTGATGAAGGAGATGGGAGTGGAAGAGTTGATGGACTCTTATGGTACAAAGATTTGGGGAACCATCTTTATGGGGAATTCTCAATGGCTGTAGTTCAGGCCAATAATTTATTGGAAGATAGAAGTGAACTTGAGTCTGGACCTTTGAGTTCCAACCATTTGGGTCCTCAAGGAACCTTTATAGGTGTATATGATGGCCATGGTGGAACTGAGGCCTCTCAGTTTGTCAGTGACAATCTTTTCTGCAATCTCAAAAGGATTGCAGGTGAAAATGAAGGCATGTCAGAAAGTGTCATAAAAAGGGCATTTTCAGCAACAGAGGAGGGTTTTCTATCTCTTGTGAGGAAGCAGTGGCTAAGCAAGCCACAGATTGCATCCATGGGTACTTGCTGTTTGGTGGGGATAATTTGCAATGGCATGCTATATATTGCAAATTCTGGAGACTCCCGGGTGGTGTTAGGAAGAGTAGAGAGGGCACTAGGGGAAGCATCAGCTATACAATTATCTACAGAACACAATGTTAACCAAGAAACAGTTAGAGATGAACTTCGCTCAAAGCATCCCTATGATTCACACATAGTGGTTATGAGACACAACGTTTGGCGTGTCAAAGGCCTCATACAGGTTTCACGCTCCATAGGTGATGCATATTTGAAGAAAGCAGAGTTTAATAGGGAACCTCTACCATTGAAGTATAGACTACCTGAAACATTCTTCAAGCCAATTCTTAGTTGTGAGCCATCAATATCATTGCACAAACTCCACCCTGATGATCAATTTCTCATATTTGCTTCTGATGGTTTATGGGAGCATCTTAGCAATCAAGAGGCTGTTAACATAGTCAGCAATAACCCACCTAACGTAAGGGGAATTGCTAGGCGACTTGTGAAAGCTGCACTTAGAGAAGCAGCTAAGAAGAGTGAAATTAGACTTGCAGACCTCCAAAAGATTGAACAAGGGACAAGGAGAAACTTCCATGATGATATAACAGTTATTGTTGTATTTCTAAATCCCAAAATGATTGATAATGCCTCTCTCTGCGGTTCTCCTCTTTCAATCAAAGGAGGCGAGTCAGCCAATTACTAG 1119 0.42 MVRSCWKPATDGDEGDGSGRVDGLLWYKDLGNHLYGEFSMAVVQANNLLEDRSELESGPLSSNHLGPQGTFIGVYDGHGGTEASQFVSDNLFCNLKRIAGENEGMSESVIKRAFSATEEGFLSLVRKQWLSKPQIASMGTCCLVGIICNGMLYIANSGDSRVVLGRVERALGEASAIQLSTEHNVNQETVRDELRSKHPYDSHIVVMRHNVWRVKGLIQVSRSIGDAYLKKAEFNREPLPLKYRLPETFFKPILSCEPSISLHKLHPDDQFLIFASDGLWEHLSNQEAVNIVSNNPPNVRGIARRLVKAALREAAKKSEIRLADLQKIEQGTRRNFHDDITVIVVFLNPKMIDNASLCGSPLSIKGGESANY. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05444 372 Coils Coil 308 328 - -
Seca8g05444 372 PANTHER PROTEIN PHOSPHATASE 28 345 IPR015655 GO:0004722|GO:0006470
Seca8g05444 372 ProSiteProfiles PPM-type phosphatase domain profile. 34 347 IPR001932 -
Seca8g05444 372 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Seca8g05444 372 SMART PP2C_4 31 345 IPR001932 -
Seca8g05444 372 Gene3D - 28 356 IPR036457 -
Seca8g05444 372 CDD PP2Cc 62 347 IPR001932 -
Seca8g05444 372 Pfam Protein phosphatase 2C 60 317 IPR001932 -
Seca8g05444 372 SUPERFAMILY PP2C-like 63 348 IPR036457 -
Seca8g05444 372 FunFam Phosphatase 2C family protein 26 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05444 Seca-Chr8 145458879 145462295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05444 1 367 PP2C-type Phosphatase Gene Family AT3G12620 66.216 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05444 K01102 - gmx:100814123 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05444 8 145458879 145462295 Seca8g05444 8 145458879 145462295 ECH
Seca8g05444 8 145458879 145462295 Seca2g04564 2 131766025 131768815 PCT