Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05438 ATGGGTTGGATTCCTTGTTCTGGAACTTCAAACACTAAGAAGAAGAAGAAGTTGGAGAAGATGGAAGTTCAGAACAGCCTGGTTGATCCGATCAAAGCCACCCCAGGGAAATTGAAGAGGAATTCATCCATGAATTCCAATGATTCCTCTAAAAATGGAAATCCTGATCACATTGCTGCACAGACATTCACATTCCGTGAGTTGGCAGCTGCAACTAGAAATTTTAGAGCAGAATGTCTTTTGGGCGAGGGAGGCTTTGGCAGAGTATACAAAGGGCGTTTGGAAAATATTAATCAGGTTGTTGCGATTAAGCAACTTGATCGGAATGGGCTGCAAGGGAATAGAGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTTCTTCACCATCCTAACCTTGTCAACCTGATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATACATGTCATTAGGATCCTTGGAAGACCACTTACATGGTATTTGTATTTCAAATTTGTATGTTATATTTAAATTTTATATTTCTCCTAGCAAGAAGCGACTTGACTGGAACACAAGAATGAAAATAGCTGCTGGGGCAGCAAGGGGATTGGAGTATCTACATGATAAAGCTAACCCACCTGTCATATATCGAGATTTAAAGTGCTCAAACATTTTGCTAGGTGAAGGGTATCATCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCAGTGGGCGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCACCAGAGTATGCAATGACAGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCGATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCGTGGGCTAGACCCTTGTTTAAAGATCGAAGAAAATTTTCACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCCAGAGGGATATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCCAATATGCGTCCAGTTATAGCTGATGTAGTCACAGCTTTGAGTTACCTTGCTTCACAAAGATATGACCCCAATACTCAGACAGTACAAAGCTCTCGCCTTCCTCCTGGAACTCCTCCTAGAAACAAGAGGGGTCAGTGA 1185 0.4186 MGWIPCSGTSNTKKKKKLEKMEVQNSLVDPIKATPGKLKRNSSMNSNDSSKNGNPDHIAAQTFTFRELAAATRNFRAECLLGEGGFGRVYKGRLENINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLHGICISNLYVIFKFYISPSKKRLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGIYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDPNTQTVQSSRLPPGTPPRNKRGQ. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05438 394 ProSiteProfiles Protein kinase domain profile. 75 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05438 394 MobiDBLite consensus disorder prediction 372 394 - -
Seca8g05438 394 FunFam Serine/threonine-protein kinase PBS1 47 151 - -
Seca8g05438 394 MobiDBLite consensus disorder prediction 38 56 - -
Seca8g05438 394 FunFam Serine/threonine-protein kinase PBS1 152 380 - -
Seca8g05438 394 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Seca8g05438 394 CDD STKc_IRAK 81 362 - -
Seca8g05438 394 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Seca8g05438 394 Gene3D Transferase(Phosphotransferase) domain 1 152 381 - -
Seca8g05438 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Seca8g05438 394 SMART serkin_6 75 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05438 394 Pfam Protein tyrosine and serine/threonine kinase 79 361 IPR001245 GO:0004672|GO:0006468
Seca8g05438 394 SUPERFAMILY Protein kinase-like (PK-like) 56 362 IPR011009 -
Seca8g05438 394 MobiDBLite consensus disorder prediction 29 56 - -
Seca8g05438 394 PANTHER OS07G0668900 PROTEIN 19 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05438 Seca-Chr8 145373398 145377044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05438 29 367 Glycoside Hydrolase AT3G07070 64.307 7.11e-161 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca8g05438 PK_Tyr_Ser-Thr 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05438 - - gmx:100776041 703.745