Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05437 ATGCATAGTGGAGAATTTGAAGCCCTAAATAGAAGACCCAAGTCCTCAGATATTGAAAATAAAGGTACTAATAATGATGAAGAATTGCCATCTCTTGAGCTCAGTTTAAAAAGGCTTAGAGGGGTTAAAGATGCTGGTATTACAATTCAGGATGAACGGAATGTTTTGAGACGTTCCGATCAGTCTGCTTTCTCAAGATACAATGCAGCCTCTAATACTAAGAAGTCTCCCACTGGATGTGTTGGAAGCAATTCTCCACATAATACTAGCTTAGAAGTTACAAAGAAAGATTCATCTCGTGACATTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGGCGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTTTACTAAATCTACTGTTATAAGTGAGCCAGCAGTGGCATCAACAACTAAATGTTTGTACCAAACATCTGCTTTCCAGCCTGTAAAGAACAACCTTCTGTGTACCTCTCAACAAGTTGTCTTACATAATACTGAAGATACAACAACAATGCTGGCACCACCTAAAGTAGACACTCTTAAGGATTCTGCGACTCAGGACTTCCATTGCCATTATGAAAACCATAACTGTATTTCTAACAACATACAGCACCAGCTGCCACCTGATCACGATGCTGAATCTTTAAAGAAAATGGCTGTTGCTGCTCCACATTGTGGGTCATCAAATGTGGTTGAAGTGCTAGTTGAAGGTAATATTGGAAATTACAGTGTCAATAGGAGTGCCTCAGGTAGCAACAATGGAAGCAATGGACAAAATGGTAGCAGCACAGCAGTTAATGCTGGAGGGACAAACATAGAAAGCAACAATGGACTCACTGGGAATAGTGGCTGTGGTGATGCTAGTGGGAGTGGAAGTGGAAGTGCCAACAAAGTAGATCAAAACAAGACTTCTCAAAGGGAAGCAGCTCTAACTAAATTTCGCCAAAAGAGAAAGGAGAGAAAGGAGAGAAAGGAGAGGTGCTTTCATAAAAAGGTTCGATATCAGAGCAGAAAGAAATTAGCTGAACAACGACCTCGGTTTCGTGGACAATTTGTGCGACAGTCCTCTAACGAAAAATCAAGTGAGGCAACAGATAGCTGA 1131 0.4067 MHSGEFEALNRRPKSSDIENKGTNNDEELPSLELSLKRLRGVKDAGITIQDERNVLRRSDQSAFSRYNAASNTKKSPTGCVGSNSPHNTSLEVTKKDSSRDIQSHSSGNPPNQNSNGASNNIDMGSTTNNAFTKSTVISEPAVASTTKCLYQTSAFQPVKNNLLCTSQQVVLHNTEDTTTMLAPPKVDTLKDSATQDFHCHYENHNCISNNIQHQLPPDHDAESLKKMAVAAPHCGSSNVVEVLVEGNIGNYSVNRSASGSNNGSNGQNGSSTAVNAGGTNIESNNGLTGNSGCGDASGSGSGSANKVDQNKTSQREAALTKFRQKRKERKERKERCFHKKVRYQSRKKLAEQRPRFRGQFVRQSSNEKSSEATDS. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05437 376 ProSiteProfiles CCT domain profile. 322 364 IPR010402 GO:0005515
Seca8g05437 376 MobiDBLite consensus disorder prediction 59 127 - -
Seca8g05437 376 MobiDBLite consensus disorder prediction 1 32 - -
Seca8g05437 376 MobiDBLite consensus disorder prediction 103 127 - -
Seca8g05437 376 MobiDBLite consensus disorder prediction 359 376 - -
Seca8g05437 376 MobiDBLite consensus disorder prediction 60 92 - -
Seca8g05437 376 Pfam CCT motif 316 364 IPR010402 GO:0005515
Seca8g05437 376 MobiDBLite consensus disorder prediction 258 318 - -
Seca8g05437 376 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 103 366 IPR045281 GO:0009909
Seca8g05437 376 MobiDBLite consensus disorder prediction 258 376 - -
Seca8g05437 376 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05437 Seca-Chr8 145365747 145370514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05437 5 375 Response Regulator Gene Family AT5G02810 42.328 2.82e-56 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g05437 CCT 1.9e-12 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05437 K12129 - gmx:100796933 585.874