Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05436 ATGTCGCCACGTGTTCCTCTCCAAATCTTCAAGATTTTCTCCGTTACCATATCCGCCCTTGAGCACCCGGCTTTTGATTTCATCCACATCAGCAAGGCCCTGTCTCTAAAACCCGATGCCAACCTGGAAATATCTTCCTCCACGTGGCATTTCGCGAACATTCCACACCTCCATTTCCTCCACGTCATCAATCTCGGCCCTCGCAGTCCGCACCCACCCGATATCTTTCTCCTCTTCCCTAAACTAACGTCGGCGTTATCTGCTTCCTCACCGTTCCTTCAGATTGGAAAGATCTCTTGTGTGTTTATGGTTACAGCTCTGACGCTTCTTCTTCGCATGCATAACCGTTTTGGATTTTCAGGTGAGAACAGTAGAAAGGGTTTTGTTAGTCAGTACTCAGTGGTATGGATGTTTGGTTGGGCTGTATCTTGGGCATTCTGGGTGACAAGGGGTGTCCAGATGAGTGTTGATGGTGACAGCAAAGAGCTGAAAGAACTGAGTCAGCGCTTACGGGATGAGAAGAAGACCTTTAAAGAAGGAGTTTCTGGTGAAGATAATGAAGTGAAATGTAATGGAGCAGCTGAAGAAGTTAAGGTTGGACAGGGGGGGAATGTGGAATCCTCTTCTGTCCAGCAACATATACCACAGCAACAGCCTCAAGGGGCAATGATTTGTTGGGAGAGGTTTTTACATATTAGATCCCTTAAGGTCTTGCTTGTGGAAAATGATTACTCTACCCGCCATGTTGTCACTGCACTGCTTCGCAATTGTAGCTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTTGTTTTAACTGAGGTAGCAATGCCTGGCTTATCTGGCATTGGTCTTCTATACAAGATTATGGGCCACAAAACAAGGAAAAATATTCCAGTAATTATGATGTCATCTCTTGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGCGAAAGTGGCACACAAACCCAGAAGTCTGTAAAATCGAAGAGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGACGAGGATGACAATGGAAGTATAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCCAAACCAGTCTCCCAGTGGGATCAAATAACCGAGTGCCCTGATAGCACTTGTGCTCAAGTTGTTCACTCCAATGCTGAAATATGTGGGAACAAGGTGGTTCCTGTGGCCACAAAGGAGTGTCAAGAACAGAAGGAACAAATTGGTACGACCGAAATTCCTTGA 1440 0.4472 MSPRVPLQIFKIFSVTISALEHPAFDFIHISKALSLKPDANLEISSSTWHFANIPHLHFLHVINLGPRSPHPPDIFLLFPKLTSALSASSPFLQIGKISCVFMVTALTLLLRMHNRFGFSGENSRKGFVSQYSVVWMFGWAVSWAFWVTRGVQMSVDGDSKELKELSQRLRDEKKTFKEGVSGEDNEVKCNGAAEEVKVGQGGNVESSSVQQHIPQQQPQGAMICWERFLHIRSLKVLLVENDYSTRHVVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVAMPGLSGIGLLYKIMGHKTRKNIPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSDNNSGSNDEDDNGSIGLNNGDGSDNGSGTQSSWTKRAVEVDSPKPVSQWDQITECPDSTCAQVVHSNAEICGNKVVPVATKECQEQKEQIGTTEIP. 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05436 479 Gene3D - 234 390 - -
Seca8g05436 479 FunFam Two-component response regulator-like PRR37 235 393 - -
Seca8g05436 479 SUPERFAMILY CheY-like 233 359 IPR011006 -
Seca8g05436 479 Pfam Response regulator receiver domain 237 348 IPR001789 GO:0000160
Seca8g05436 479 CDD psREC_PRR 237 340 - -
Seca8g05436 479 Coils Coil 156 176 - -
Seca8g05436 479 PANTHER TWO-COMPONENT RESPONSE REGULATOR 235 422 IPR045279 GO:0009736
Seca8g05436 479 MobiDBLite consensus disorder prediction 359 431 - -
Seca8g05436 479 MobiDBLite consensus disorder prediction 390 420 - -
Seca8g05436 479 ProSiteProfiles Response regulatory domain profile. 236 354 IPR001789 GO:0000160
Seca8g05436 479 MobiDBLite consensus disorder prediction 359 376 - -
Seca8g05436 479 SMART REC_2 235 350 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05436 Seca-Chr8 145352588 145364964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05436 207 475 Response Regulator Gene Family AT5G60100 61.538 3.26e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g05436 Response_reg 7.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05436 K12129 - gmx:100806454 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05436 8 145352588 145364964 Seca8g05436 8 145352588 145364964 ECH