Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05430 ATGCCGCCAAAGCAGCAATCAAAAGCTGATATAGCGAAAAAGCAGAAGGTTGTAGAGGACAAAACCTTCGGTCTCAAAAACAAAAACAAGAGCAAGCAAGTCCAGAAATATGTCCAGAACCTCAAACAATCCGTGCAGCCCAGACCCGATCCTTCCAAAGTCGATGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGAGAAGGAGCTGAATGATTTGTTCAAAATCGCTGTTAGTCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAATCCATATTATGTGAGTTTTTTAAAGTGGGGCAGTGTGCCAAGGGCTTCAAGTGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACTTATACAGTGATAAGCGTGACCAGGAAACAATGGAGGATTGGGATCAGGAGACCTTGGAGAAGGTGGTGGAGTCAAAGAAAACGGAGTATAATCAGAACAAACCAACTGACATAGTATGTTTCATTATATTTGTTGGAACTTGGAACTATGTTACACTGTTTTGCTTGATATTTCACATTTTCTTTTTTCATGATTTACAATGGGGCTTCTTTTGGGTCTGTAAATACTTTTTGGAAGCAGTAGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCCAATGGTGGTAAGAATTGCCACTATAGACATGCGCTTCCCCCCGGATATGTTTTAAAATCTCAGATGAAGGCTTTGTTAGAGGAAGAAGCTGAAAAAATATCAATTGAAGAGGAGATTGAAAATCAGCGTGCCAAAGTGACAACTACAACTCCTATGACTCCTGAGTTATTCTTTCAATGGAAGAAGAAGAAGATAGAAGAGAGAGATGCTAGAATGGCTGAACAACAGGCAGAGAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGCTATTTTTGTCAGATGCTAGTTTGTTTGTGGATGATGCTGAAGCATATGAGAAGTACCAAAGAGAACCAGAATCTGATGAAACTGAACAGAACGGGAATGGGAATGCTGCTGAAGATGGTCCTAGCACCTCAGCAACAGGTGGTGCTGATGCTGATGAAGTTCCTGATGACATTGATGATGATGATGATGAATTGGACATGGATGAGTTGAATGAACTGGAAGCAAGCTTATCCAAGACTTCAATCCAAATAAAGGAAACATGA 1182 0.4154 MPPKQQSKADIAKKQKVVEDKTFGLKNKNKSKQVQKYVQNLKQSVQPRPDPSKVDAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDLYSDKRDQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCFIIFVGTWNYVTLFCLIFHIFFFHDLQWGFFWVCKYFLEAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEEAEKISIEEEIENQRAKVTTTTPMTPELFFQWKKKKIEERDARMAEQQAERAKNDRMSGRELFLSDASLFVDDAEAYEKYQREPESDETEQNGNGNAAEDGPSTSATGGADADEVPDDIDDDDDELDMDELNELEASLSKTSIQIKET. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05430 393 Gene3D - 87 237 - -
Seca8g05430 393 ProSiteProfiles Zinc finger C3H1-type profile. 197 230 IPR000571 GO:0046872
Seca8g05430 393 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 164 - -
Seca8g05430 393 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Seca8g05430 393 Coils Coil 53 73 - -
Seca8g05430 393 MobiDBLite consensus disorder prediction 323 393 - -
Seca8g05430 393 Gene3D - 238 313 - -
Seca8g05430 393 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Seca8g05430 393 SMART c3hfinal6 194 229 IPR000571 GO:0046872
Seca8g05430 393 Coils Coil 280 300 - -
Seca8g05430 393 Coils Coil 235 262 - -
Seca8g05430 393 Pfam DRG Family Regulatory Proteins, Tma46 249 334 IPR032378 -
Seca8g05430 393 MobiDBLite consensus disorder prediction 40 64 - -
Seca8g05430 393 MobiDBLite consensus disorder prediction 358 377 - -
Seca8g05430 393 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05430 Seca-Chr8 145306978 145312316 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g05430 DFRP_C 3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05430 - - gmx:100778701 594.349