Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05427 ATGAGATCAACAGAGTGGAAGTTGTGTTGGGACAATTGGACGATCGCAAGTTGTGCACCGCACATGTACCCAACCCGCCACGCCACATCCTCTCTTTCTATCTCTATCTCTAACTTCTTTTGGACCCTATGTTCTTTGTGGCACACCATCATCAACTCCAACACTTCCAATTCTCAGTCAATGGCAACACCACCACCCACCGATGCCTCTGCCAAGAAGGTCAGAAAGCCCTACACCATTACCAAGTCCAGAGAGAGCTGGACTGAGGAAGAGCATGACAAGTTTCTCGAAGCTCTTCAACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACAGTTATTCAGATTCGAAGCCATGCCCAAAAATACTTCTTGAAGGTTCAAAAAAATGGGACTGTAGCACATGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAAGCATCAAAAAATGTTTTGGTACCACTACCAGCTTCCATTCATTATGCTTCTTCGACAAATACCCTTGCTCCTGGGTATGCCACATGGGATGAAACTTCCATGCTGATGAATGCCGGGTCCAATAAACCCATGATCTGTCAGGATGAACTCAACATTCTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGATAACACAGATTAACAACAGTGTTAGTGGTGTTGGGAATTCTACTAGAAGGATACTGACTTCTGAGATACCAAAGCAAGGGAAACAAGCTCCAGTGCTTCATGGTTTGCCAGACTTTGCTGAAGTTTACAGTTTCATTGGAAGTGTTTTTGATCCAGATACAAATGGTCATGTTCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAATCTCACTGTCAACTTGTCTAGCCCTGACTTTGAGTCTATTGTAAGTTTCAATATCAATCTCAATTATGATTACATAGTTTTGCCAATATCTGCCAAAAAAATTATTTTGTTTTGA 1011 0.4154 MRSTEWKLCWDNWTIASCAPHMYPTRHATSSLSISISNFFWTLCSLWHTIINSNTSNSQSMATPPPTDASAKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASIHYASSTNTLAPGYATWDETSMLMNAGSNKPMICQDELNILHGNEADIGSKGITQINNSVSGVGNSTRRILTSEIPKQGKQAPVLHGLPDFAEVYSFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPDFESIVSFNINLNYDYIVLPISAKKIILF. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05427 336 ProSiteProfiles SANT domain profile. 82 135 IPR017884 -
Seca8g05427 336 SMART sant 83 131 IPR001005 -
Seca8g05427 336 PANTHER SWI/SNF COMPLEX-RELATED 56 305 - -
Seca8g05427 336 CDD SANT 86 129 IPR001005 -
Seca8g05427 336 MobiDBLite consensus disorder prediction 55 75 - -
Seca8g05427 336 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Seca8g05427 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Seca8g05427 336 Gene3D - 87 134 - -
Seca8g05427 336 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Seca8g05427 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 131 IPR006447 GO:0003677
Seca8g05427 336 FunFam protein REVEILLE 6 isoform X1 86 134 - -
Seca8g05427 336 SUPERFAMILY Homeodomain-like 78 134 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05427 Seca-Chr8 145265725 145271114 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g05427 Myb_DNA-binding 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05427 - - gsj:114372630 463.381