Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05426 ATGGCCGCAGCAGCACGTCCCCTCGTCACCGTGCAGGCCCTGGAGGGCGACATGGCCACCGATGCAGCCGCCACCGTCCCTATCCCCGACGTCATGAAGGCTTCCATCCGTCCCGACATCGTCAATTTCGTCCATTCCAACATCTCCAAGAACAGCCGCCAGCCCTATGCTGTCAGCCGCCGTGCCGGCCACCAGACCTCCGCCGAGTCATGGGGAACTGGTCGTGCCGTCTCCCGTATCCCCCGTGTTCCTGGTGGTGGTACCCACCGCGCTGGTCAGGGAGCCTTCGGCAACATGTGCCGTGGTGGTCGCATGTTCGCTCCAACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAATGTCAACCAGAAGCGATACGCCGTCATATCCGCCATCGCCGCCTCCGCCATCCCCTCCCTCGTCCTCGCCCGTGGTCACCGGATCGAGACCGTCCCTGAGCTCCCTCTCGTCGTGAGCGATTCCGCTGAGGGAGTGGAGAAAACCAAGGAAGCTATCAAGGTCCTCAAGCAGATCGGTGCCTTCCCTGACGCCGAGAAAGCCAAGGACAGCCATGGCATTCGCCCTGGAAAAGGTAAAATGCGTAACCGTAGGTACATCTCTCGCAAGGGTCCTCTTGTTGTTTATGGAACTGAAGGAGCTAAAGCTGTTAAGGCTTTCCGTAACGTTCCTGGTGTTGAGGTTGCCAACGTGGAGAGGCTCAACCTTCTGAAGCTTGCTCCTGGTGGACACCTTGGAAGGTTTGTGATTTGGACCAAGTCTGCTTTTGAGAAACTTGATTCCATTTATGGGTCTTTCGATAAGCCTTCTGAGAAGAAGAAGGGTTATGTCCTTCCAAGGCCCAAGATGGTTAACTCTGATCTGTCTAGGATCATTAACTCTGATGAGGTTCAGTCTGTTGTGAGGCCAATCAAGAAGGATGTTAAACGTGCCACTCTCAAGAAGAATCCTCTCAAGAACCTCAATGTCATGCTCAGGCTTAATCCTTATGCTAAGACCGCTAAGAGGATGTCTCTCCTCGCTGAAGCTCAGCGCCTCAAGGCTAAGAAGGAGAAGCTCGACAAGAAGAGAAAGACCGTCTCTAAGGAGGAAGCTTCTGCCATCAAGGCTGCAGGAAAAGCATGGTATCACACCATGGTGTCAGATTCTGATTACACAGAATTTGATAACTTCTCAAAGTGGTTGGGTGTTTCACAGTGA 1218 0.5419 MAAAARPLVTVQALEGDMATDAAATVPIPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVISAIAASAIPSLVLARGHRIETVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLVVYGTEGAKAVKAFRNVPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYVLPRPKMVNSDLSRIINSDEVQSVVRPIKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMSLLAEAQRLKAKKEKLDKKRKTVSKEEASAIKAAGKAWYHTMVSDSDYTEFDNFSKWLGVSQ. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05426 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Seca8g05426 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Seca8g05426 405 PANTHER 60S RIBOSOMAL PROTEIN L4 4 398 IPR045240 -
Seca8g05426 405 FunFam 60S ribosomal protein L4 3 308 - -
Seca8g05426 405 Coils Coil 342 372 - -
Seca8g05426 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Seca8g05426 405 Pfam Ribosomal protein L4/L1 family 27 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Seca8g05426 405 MobiDBLite consensus disorder prediction 54 73 - -
Seca8g05426 405 SUPERFAMILY Ribosomal protein L4 20 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Seca8g05426 405 MobiDBLite consensus disorder prediction 54 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05426 Seca-Chr8 145260578 145263577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05426 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 84.158 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05426 K02930 - gmx:100779764 763.066