Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05420 ATGGCCGATGCTCCGACGAGTCCCGGAGGCGGAGGCGACCACGAGAGCGGCGGCGACCACAGTCCGCGCTCCAATTTCCGAGAGCAGGATCGGTACCTTCCCATCGCCAACATCAGCCGTATCATGAAGAAGGCGCTTCCTGCAAACGGAAAAATTGCCAAGGACGCCAAGGAGACCGTTCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTCACTAGCGAGGCGAGCGATAAGTGCCAGAAAGAAAAGAGGAAGACCATTAACGGTGATGATTTGCTTTGGGCAATGGCTACTCTGGGTTTCGAGGATTATATTGATCCACTCAAAATTTACCTCACCACATACAGAGAGGGTGATACAAAGGGCTCAGCCAAGGGTGGAGATGCATCTGCTAAGAAAGATGTTCATCTGAATTCCAGTGCCCAGCTTGCTCATCAAGGTTCTTTCTCACAAGTTGTTAATTACTCGAACTCTCAGGCTCAACACATGATGGTTCCTATGCAAGGCCCACAATAG 516 0.5078 MADAPTSPGGGGDHESGGDHSPRSNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKIYLTTYREGDTKGSAKGGDASAKKDVHLNSSAQLAHQGSFSQVVNYSNSQAQHMMVPMQGPQ. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05420 171 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Seca8g05420 171 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Seca8g05420 171 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Seca8g05420 171 FunFam Nuclear transcription factor Y subunit B-3 21 146 - -
Seca8g05420 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Seca8g05420 171 SUPERFAMILY Histone-fold 29 127 IPR009072 GO:0046982
Seca8g05420 171 MobiDBLite consensus disorder prediction 1 29 - -
Seca8g05420 171 Gene3D Histone, subunit A 19 164 IPR009072 GO:0046982
Seca8g05420 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca8g05420 171 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05420 Seca-Chr8 145191573 145194980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05420 7 169 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.471 8.61e-87 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca8g05420 CBFD_NFYB_HMF 5.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05420 K08065 - gmx:100820170 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05420 8 145191573 145194980 Seca8g05420 8 145191573 145194980 ECH
Seca8g05420 8 145191573 145194980 Seca2g04587 2 131949838 131955686 PCT