Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05416 ATGGGGAAGACACGTGGAATGGGAGCTGCTCGCAAGCTGAAGTCCCACCGTAGGAGACAAAGGTGGGCAGACAAGGCATACAAGAAGTCCAATCTTGGGAATGAATGGAAGAAACCTTTTGCTGGCTCATCACATGCAAAGGGAATTGTCCTTGAGAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGTAAGTGTGCCAGGGTTCAACTCATCAAAAATGGGAAGAAGATTGCCGCATTTGTCCCAAATGATGGTTGCTTAAACTACATAGAAGAAAATGATGAAGTCTTGATAGCTGGATTTGGACGAAAGGGTCATGCTGTGGGTGATATTCCTGGTGTCAGATTCAAGGTAGTGAAGGTATCTGGTGTCTCTCTTTTGGCTCTTTTCAAGGAGAAGAAGGAAAAGCCAAGGTCTTGA 429 0.4569 MGKTRGMGAARKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05416 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Seca8g05416 142 NCBIfam 30S ribosomal protein S12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Seca8g05416 142 Gene3D - 25 142 IPR012340 -
Seca8g05416 142 MobiDBLite consensus disorder prediction 9 24 - -
Seca8g05416 142 MobiDBLite consensus disorder prediction 1 28 - -
Seca8g05416 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca8g05416 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca8g05416 142 FunFam 40S ribosomal protein S23 25 142 - -
Seca8g05416 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca8g05416 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Seca8g05416 142 Pfam Ribosomal protein S12/S23 32 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05416 Seca-Chr8 145131069 145132888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05416 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.070 4.20e-95 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05416 K02973 - twl:119995137 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05416 8 145131069 145132888 Seca8g05416 8 145131069 145132888 ECH
Seca8g05416 8 145131069 145132888 Seca2g04591 2 131978865 131981064 ECH
Seca8g05416 8 145131069 145132888 Seca2g04591 2 131978865 131981064 PCT