Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05401 ATGGCTTCCCAAAACCCACCGGAGGAAGAAAACTCAAAGCGGAATTGGTCCCTCAAAGACTTTGAGATCGGTAAACCTCTCGGAAAAGGAAAATTTGGCCGAGTCTACGTCGCCAGAGAAGTCAAGAGCAAATATGTTGTGGCATTGAAGGTTATTTTTAAGGAACAAATTGAAAAGTACAAGATTCACCATCAACTGAGGAGAGAGATGGAGATACAAAGCAGTCTTCGCCACCCAAACATCCTGAGGCTCTATGGCTGGTTTCATGATGCTGATCGGGTTTTCTTGATTCTTGAGTATGCTCATAATGGTGAGCTTTATAGGGAACTAAGAAAAAAGGGGCATCTCACTGAGAAGCAAGCTGCCACGTATATTCTGAGCCTCACAAGGGCGTTGGCTTATTGTCATGAGAAGCATGTTATTCATAGGGATATCAAGCCTGAAAATTTGTTACTTGACCATGAGGGTCGTCTTAAAATTGCGGATTTTGGTTGGTCTGTACAGTCTAGAAGCAAAAGACATACCATGTGTGGAACATTGGATTATCTAGCACCAGAAATGGTTGAAAACAAAGCTCATGACTACGCAGTTGATAACTGGACTCTAGGTATTCTATGCTTTGAGTTCCTCTATGGCGTTCCTCCATTTGAGGCTGAGAGTCAAGTTGATACCTTCAAAAGGATAATGAAGGTTGACCTAAGCTTCCCTCACACTCCTCCTGTTTCTTCAGATGCCAAAAATCTGATTAGTCGGCTCTTGGTAAAAGACTCCTCACGAAGGCTCTCTCTTCAAAAGATAATTGAACATCCTTGGATAGTCAAGAATGCAAATCCGATGGGTATCTGCAAGTAG 852 0.4261 MASQNPPEEENSKRNWSLKDFEIGKPLGKGKFGRVYVAREVKSKYVVALKVIFKEQIEKYKIHHQLRREMEIQSSLRHPNILRLYGWFHDADRVFLILEYAHNGELYRELRKKGHLTEKQAATYILSLTRALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCFEFLYGVPPFEAESQVDTFKRIMKVDLSFPHTPPVSSDAKNLISRLLVKDSSRRLSLQKIIEHPWIVKNANPMGICK. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05401 283 ProSiteProfiles Protein kinase domain profile. 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05401 283 Pfam Protein kinase domain 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05401 283 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Seca8g05401 283 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 8 281 IPR030616 GO:0004672
Seca8g05401 283 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Seca8g05401 283 FunFam Aurora kinase A 13 104 - -
Seca8g05401 283 Gene3D Transferase(Phosphotransferase) domain 1 105 280 - -
Seca8g05401 283 SUPERFAMILY Protein kinase-like (PK-like) 14 276 IPR011009 -
Seca8g05401 283 CDD STKc_Aurora 20 273 - -
Seca8g05401 283 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Seca8g05401 283 PIRSF ILK 1 274 - -
Seca8g05401 283 SMART serkin_6 21 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05401 283 FunFam Serine/threonine-protein kinase ark1 13 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05401 Seca-Chr8 145013210 145016578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05401 4 277 CBL-interacting serine-threonine protein kinases AT5G25110 38.652 2.06e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Seca8g05401 Pkinase 3.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05401 K08850 - gmx:100800111 535.028