Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05400 ATGAGCGTCATCGACATTCTAACCAGAGTTGATACCATTTGCAAGAAGTACGACAAATACGATGTCGAAAAGCACAAGGATTCCAATCTCGCCGGCGACGATGCCTTTGCCAGACTCTACGCCAGTGTCGACGCCGACATTGAGGCCCTGCTTCAGAAAGCAGAAACCGCTTCCAAGGACAAAGGTAGGGCTTCTGCTGTAGCGATCAATGCGGAGATTCGTCGTACCAAAGCTCGGTTGCTGGAGGAGGTCCCCAAGTTACAGAAGTTGGCTATGAAAAAGGTAAAAGGGCTTTCATCGCAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGACAGAATCCAAGCTATCCCAGATGGGACTCCTGCTGCACCAAAACAAACTGGAGGCTGGGCAACTTCTGCCTCACGTGCTGAAATTAAATTTGACTCAGCAAATACAGATGGGCGATTTGACGATGAATACTTCCAACAAACTGAGGAGTCAAGTCGATTCAGGCAAGAATATGAAATGCGTAGAATAAAACAGGATCAAGGTTTGGATGTGATTGCAGAAGGATTGGATACATTGAAAAACATGGCATCTGATATGAATGAGGAACTGGATAGACAAGTTCCACTGATGGATGAGATTGACACTAAGGTGGACAAGGCATCCTCTGACCTTAAGAATACCAATGTTAGACTTAGAGACACAGTAAACCAGCTTCGATCCAGTCGAAACTTTTGCATCGATATTGTTTTATTGATTATAATTCTGGGAATTGCTGCCTACTTATACAATGTGCTAAAGAAATGA 807 0.4424 MSVIDILTRVDTICKKYDKYDVEKHKDSNLAGDDAFARLYASVDADIEALLQKAETASKDKGRASAVAINAEIRRTKARLLEEVPKLQKLAMKKVKGLSSQEFAARNDLVLALPDRIQAIPDGTPAAPKQTGGWATSASRAEIKFDSANTDGRFDDEYFQQTEESSRFRQEYEMRRIKQDQGLDVIAEGLDTLKNMASDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLRDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK. 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05400 268 CDD SNARE_Qc 178 233 - -
Seca8g05400 268 Pfam SNARE domain 210 259 IPR000727 -
Seca8g05400 268 SUPERFAMILY SNARE fusion complex 167 233 - -
Seca8g05400 268 SMART tSNARE_6 168 235 IPR000727 -
Seca8g05400 268 FunFam Putative syntaxin-71-like 173 234 - -
Seca8g05400 268 ProSitePatterns Syntaxin / epimorphin family signature. 179 218 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca8g05400 268 Gene3D - 173 234 - -
Seca8g05400 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Seca8g05400 268 PANTHER SYNTAXIN 45 255 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05400 Seca-Chr8 145005775 145009374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05400 1 267 SNARE and Associated Proteins AT3G09740 75.465 7.09e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05400 K08506 - gmx:100819272 459.914