Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05399 ATGCAAATGATGCCCGGTGACCCCTTTTCACTATCCACTTCAATTGGAGGCTTTACTCAAGAGCAAAACACAAACCCTAACCCTAAACCTAACCCTCCTCCCGTTGCCAAGAAGAAGAGGAATCTTCCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTTTCCCCAAAGACCCTCATGGCCACCAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGAGACCAAAACCTTCAGCTTCACAGAAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCCAACAAGGAGGTTCGGAAGAAGGTTTACATCTGTCCAGAGAAGAGCTGTGTCCACCATGACCCAGCCAGGGCACTTGGTGATCTGACAGGGATAAAAAAGCACTTCAGCAGAAAGCACGGTGAGAAAAAGTGGAAGTGTGAGAAATGCTCTAAGAAATACGCAGTCCAATCCGATTGGAAAGCACACACCAAAACCTGTGGCACTAGAGAATATAAGTGTGACTGTGGCACCCTCTTCTCCAGGAAGGATAGCTTCATTACACACAGAGCATTCTGTGATGCATTGGCGGAAGAGAGTGCAAGACTGACCTCAGTTTCTACAACAAATCTAAATTTCAAGAATGAAGAGGGTGTTGGTGTGATGGGGTCAGTATCACAGAGTGGTGGTTTATCACAAGGACTAATTGCAGGGCAAGGTCTTCATCAAAATGTGGCTGGGATTCCACAGTTTAGTACTCCACATGGTTTTCGTTTAGATTTCAATGGAGGAATTAGCATGGGTGCAGAACAAAGGCCAAGTTTGTCACTATGGTTGAACCAGCAGGGGAACAATCCTGCTCCTCCTGATGTGGGACCTAATAATTCAGGGCTTTATATGTCATCATCAAATTTGCCTGAGATGATGCAAATGGCATCAGCACAGGCTAATGCAGCTGCTTTAATTGGGTCTTCATCAATGTTGTCTAATTTTGGAGTGTCTGCTTCTAATTCAAACACAGCAAACCTTTCCCTGTCTTCACTTCCTATTGGGAAAAGAGGTGGAGAAGGTGGAACTGTGGATTTGGCATCTATTTATTCAGAGAATCAAAACAAGCAATCAAAGCCTGCTTCTGCTTCTCCTATGTCAGCCACTGCACTTTTGCAGAAAGCAGCTCAGATGGGTTCCACTAGAAGCACCAACCCTTCCATTTTCAGTGGTAGTTTTGGGGTAATGACCACTACCTCACCTTCCTCCCAAACTACTACCACAAGTAACCAAAACCAGCAGGGGTTTCAACAATCCTCAGAGAATTATAGTTCGAGTATGGTGGGGGGTGGTGCTACGAATAACAACTTTCCCTCATTGACGCATTCATCAAACGGTTTTGATCAACTGGTGATGCAAAACAATAACGGGCATGAGGCGGTGAAATTGAAGCTACATCATGGTCTAAATGGTGCAGAACATAATTTGACAAGAGATTTTCTTGGTGTGAGTGGTGGTGGTGGAGGTGGCCCTCAGTTTTTTCCTCAAGAGCTGGCAAAGTTTGCTTCATTAGGCTCGCCAATGGGGTTGAGCCAATTCACAAGCAATCAGTGA 1593 0.4551 MQMMPGDPFSLSTSIGGFTQEQNTNPNPKPNPPPVAKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVSTTNLNFKNEEGVGVMGSVSQSGGLSQGLIAGQGLHQNVAGIPQFSTPHGFRLDFNGGISMGAEQRPSLSLWLNQQGNNPAPPDVGPNNSGLYMSSSNLPEMMQMASAQANAAALIGSSSMLSNFGVSASNSNTANLSLSSLPIGKRGGEGGTVDLASIYSENQNKQSKPASASPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMTTTSPSSQTTTTSNQNQQGFQQSSENYSSSMVGGGATNNNFPSLTHSSNGFDQLVMQNNNGHEAVKLKLHHGLNGAEHNLTRDFLGVSGGGGGGPQFFPQELAKFASLGSPMGLSQFTSNQ. 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05399 530 MobiDBLite consensus disorder prediction 1 49 - -
Seca8g05399 530 SMART c2h2final6 142 162 IPR013087 -
Seca8g05399 530 SMART c2h2final6 66 88 IPR013087 -
Seca8g05399 530 SMART c2h2final6 107 137 IPR013087 -
Seca8g05399 530 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Seca8g05399 530 Pfam Zinc-finger double-stranded RNA-binding 66 88 IPR022755 -
Seca8g05399 530 Gene3D Classic Zinc Finger 120 199 - -
Seca8g05399 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Seca8g05399 530 MobiDBLite consensus disorder prediction 366 449 - -
Seca8g05399 530 FunFam protein indeterminate-domain 12-like 45 113 - -
Seca8g05399 530 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Seca8g05399 530 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Seca8g05399 530 MobiDBLite consensus disorder prediction 1 25 - -
Seca8g05399 530 Gene3D Classic Zinc Finger 44 118 - -
Seca8g05399 530 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 505 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05399 Seca-Chr8 144992424 144994291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05399 1 216 IDZ Gene Family AT5G03150 72.083 1.03e-122 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05399 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05399 K25870 - gmx:100801182 663.685