Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05397 ATGGCAACTGAACCTTCAGGCTCTTCCAAGGATAATAATAACCAAGGCGCTGGCACCATTGAAAATAGAGCTGATATCCCAATTCAAAAGGGTCTAGAGCCATCTGAAATAACTGAGGAACTCCCAAGTGGACAACATGGAACAAGGCAAAACATTATCTTGGAGACACCCACAAGAACACAAGAGGAAGCAAGAGAAGATTTTTTGAGAATAAACATGCCTCCAACACCAATTCCATCTCCATCTCCAAGAAGAGTGATTTTTACCCCATGTGGAACTCCAAGCCCTGGTTTTGCCAAAAGCAATGAATCCCCAGGTCCCTCGTCATCAAAAAGTAGAACAAGTATCAAAACCCTTCTCCCAAAACTCAGTTTTAAATTTCGCAACACAAATTCAGAGATTGAAAAGGCTGCTTTCCTAGCACTTGAAGGTTCAGCCACAGGGACAGCAAAAAAGCCTTTTCTTTCAAGGACATTATCTCGTATCAAATCTAATGGAAAGAAAACATCATCCTTACCTGTAACCCCAATTGCTCATTCAAATCCAGGCTCTGTACATGGAGGGAACATGGCTTTTGCTTATCCAGCAATAGCTGTTGAGAAAGGATTGCAATTACCAATTCATCGTTCCCGGTCAGTTCCAACATTTACTGAAGAAGGTAACGCCACACCTTTAGGTGGCATGTTTCGTATAGTTAGGACCATACGACCATTAGATGAGAAAATTGCCACAACAACATCTATGGCATCTCCAACTAATGATACTGTTGAAAATGAGGATGGCGGTGAAGATATTCCTGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCTAATACTTTTAAATTGGAGTGCAGCTGCAAAGGTGAGCTTTCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAGGATTAAAGGTAATAGAACATGTGATGTGTGCAAGCAAGAAGTGCAGAACCTACCTGTCACTCTTTTACGAGTTCAAACTGCTCTAGGGAGCAGAGGTCAGCAAGCTGAGATTTCTCAATACAGGCAAGGGTAA 1059 0.4174 MATEPSGSSKDNNNQGAGTIENRADIPIQKGLEPSEITEELPSGQHGTRQNIILETPTRTQEEAREDFLRINMPPTPIPSPSPRRVIFTPCGTPSPGFAKSNESPGPSSSKSRTSIKTLLPKLSFKFRNTNSEIEKAAFLALEGSATGTAKKPFLSRTLSRIKSNGKKTSSLPVTPIAHSNPGSVHGGNMAFAYPAIAVEKGLQLPIHRSRSVPTFTEEGNATPLGGMFRIVRTIRPLDEKIATTTSMASPTNDTVENEDGGEDIPEEEAVCRICMVELGEGANTFKLECSCKGELSLAHQECAVKWFRIKGNRTCDVCKQEVQNLPVTLLRVQTALGSRGQQAEISQYRQG. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05397 352 SMART ringv_2 271 320 IPR011016 GO:0008270
Seca8g05397 352 ProSiteProfiles Zinc finger RING-CH-type profile. 264 326 IPR011016 GO:0008270
Seca8g05397 352 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g05397 352 PANTHER OS02G0165000 PROTEIN 21 344 - -
Seca8g05397 352 MobiDBLite consensus disorder prediction 95 115 - -
Seca8g05397 352 MobiDBLite consensus disorder prediction 1 65 - -
Seca8g05397 352 SUPERFAMILY RING/U-box 268 323 - -
Seca8g05397 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 328 IPR013083 -
Seca8g05397 352 MobiDBLite consensus disorder prediction 91 115 - -
Seca8g05397 352 CDD RING_CH-C4HC3_MARCH 272 320 - -
Seca8g05397 352 MobiDBLite consensus disorder prediction 41 58 - -
Seca8g05397 352 Pfam RING-variant domain 272 319 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05397 Seca-Chr8 144972824 144977615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05397 266 326 C3H Transcription Factor Family AT2G37950 41.935 4.38e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05397 - - lja:Lj5g3v0626850.1 496.508