Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05395 ATGGACCCAATGTGGGGGCGTTACCCGGCACCGCCGCCGCCGCAACCGGCTCCCTATGTAGAGCATCAGAAGGCGGTTACTATAAAGAACGACGTGAACATCAAGAAGGAGACTCTGAGGATTGAGCCTGATGAGGAAAATCCTGGCCATTTCCTTGTGTCATTCACTTTTGATGCCACCGTTTCTGGGAGCATCACCATAATTTTCTTCGCAAAAGAAGGTGAAGGTTGCATCCTTACCCCAATGAAAGAAGATGTTCTTCGACCTGTGACTGTAAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAGCTGGGACTGGTATCTATTTTTCAGTATTTGAGGAGTCTGAGCTATTGAAAGTGGGTGACATGGATGTCTATCCTGTAGCAGTTAAAGCAGATGCATCCTCTGGCAACCAAGACGGATCAAATGAAACTCCAACATCTGGTGGTACAAACTCTCAGATAACTCAAGCAGTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAGGTTGTTAAGCAGATATTGTGGGTGAATGGAATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGATGGGAATGACCCGGGAAAAGAGTGTGTTATCTGCTTGTCCGAGCCTCGGGACACAACTGTCCTTCCCTGCCGCCACATGTGCATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAAAGTGGGGCCTGAATCTGAGGAGTGA 804 0.4726 MDPMWGRYPAPPPPQPAPYVEHQKAVTIKNDVNIKKETLRIEPDEENPGHFLVSFTFDATVSGSITIIFFAKEGEGCILTPMKEDVLRPVTVNFQQGLGQKFRQPAGTGIYFSVFEESELLKVGDMDVYPVAVKADASSGNQDGSNETPTSGGTNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGNSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPESEE. 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05395 267 FunFam probable E3 ubiquitin-protein ligase LOG2 195 260 - -
Seca8g05395 267 CDD mRING-HC-C3HC5_MGRN1-like 209 250 IPR045195 -
Seca8g05395 267 SUPERFAMILY RING/U-box 210 255 - -
Seca8g05395 267 SMART ring_2 211 249 IPR001841 -
Seca8g05395 267 Pfam Zinc finger, C3HC4 type (RING finger) 209 255 - -
Seca8g05395 267 ProSiteProfiles Zinc finger RING-type profile. 211 250 IPR001841 -
Seca8g05395 267 MobiDBLite consensus disorder prediction 137 156 - -
Seca8g05395 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 260 IPR013083 -
Seca8g05395 267 MobiDBLite consensus disorder prediction 138 156 - -
Seca8g05395 267 PANTHER MAHOGUNIN 15 260 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05395 Seca-Chr8 144948153 144954060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05395 6 230 C3H Transcription Factor Family AT3G09770 66.953 1.36e-103 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05395 - - gmx:100789032 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05395 8 144948153 144954060 Seca8g05395 8 144948153 144954060 ECH
Seca8g05395 8 144948153 144954060 Seca2g04623 2 132236880 132240713 PCT