Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05394 ATGAAGTTTTCCCTTTTCGGTTGTTTCTCCGCATCGACCATAGACAAAAACAACAACGACTTTGCAGAAGGAGAGAATGATGGAGGCTTTCGTGTATTCACATATAACCAATTGAAATCAGCCACTGGTAATTTTAATGAGAAGATTGGAGAAGGTGGATTTGGCTCTGTTTATAAGGGGAGGCTTAGAGATGGCACTTTTGTAGCAGTGAAAGTGCTTTCCATTGAGCTCGAATCCATGCGAGGAGAGAGGGAATTCGTTGCAGAATTAGCAACACTCGCAAATATCAAGCACCAAAATCTAGCCACCCTTCAAGGGTGTTGTGTGGAAGGTGCACACAGATATTTGGTCTATGATTACATGGAGAACAACACACTCTACCACGCTTTCTTAGGTTCGGAGGATAGAAGGATGAGATTCAGTTGGGAAACAAGGAAGGACATATCCATAGGTGTGGCCCGGGGGCTTGTTGTTCTCCATGAGGAGCTTAGGCCCCATATCGTACATAGAGACATCAAAGCCAAAAATATACTTCTTGATCAGAATTTTACACCTAAAGTTTCAGACTTTGGTTTGGCAAAATTACTGAGAGATGAAAAATCTCACATCAGTACTCAAGTTGCAGGGACATTGGGTTATTTGGCTCCAGAGTATGCCAATTCTGGAAGGTTGACACGAAAATCAGATGTATATAGCTTCGGAGTGTTACTTTTACAAATTATCAGTGGCCTAGCAGTTGTAGATGCTTATCAAGATATTGAGCGGTTCATTGTAGAGAAGGCTTGGGCAGCTTATGAGACTAATGATCTATTAAGAATGGTTGATCCTGTGCTTAATATGAACTTTCCTATGGAAGAAGCTATAAAATTCCTCAAGGTGGGACTGCTTTGCGTGCAAGAAACCGCAAAGCTTCGGCCACGAATGTCAGAGGTTGTGGAAATGTTGACCAATAGAATTAATATGAAAGACGTTCACATTGCAAAACCAGGGTTTGTTGCTGACCTCAGGAACATCAAAATCAAGCAACAAGCATCAGTACACTCACCACAGGAATCAAGTTCAGCTGGAGCAAGCTTTGCAAGCTCCATTTGGAGTATGGCCAATCTTGCTCGTTAA 1116 0.4211 MKFSLFGCFSASTIDKNNNDFAEGENDGGFRVFTYNQLKSATGNFNEKIGEGGFGSVYKGRLRDGTFVAVKVLSIELESMRGEREFVAELATLANIKHQNLATLQGCCVEGAHRYLVYDYMENNTLYHAFLGSEDRRMRFSWETRKDISIGVARGLVVLHEELRPHIVHRDIKAKNILLDQNFTPKVSDFGLAKLLRDEKSHISTQVAGTLGYLAPEYANSGRLTRKSDVYSFGVLLLQIISGLAVVDAYQDIERFIVEKAWAAYETNDLLRMVDPVLNMNFPMEEAIKFLKVGLLCVQETAKLRPRMSEVVEMLTNRINMKDVHIAKPGFVADLRNIKIKQQASVHSPQESSSAGASFASSIWSMANLAR. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05394 371 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 352 - -
Seca8g05394 371 FunFam serine/threonine-protein kinase PBS1-like 12 120 - -
Seca8g05394 371 SUPERFAMILY Protein kinase-like (PK-like) 28 329 IPR011009 -
Seca8g05394 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Seca8g05394 371 Gene3D Transferase(Phosphotransferase) domain 1 121 330 - -
Seca8g05394 371 Gene3D Phosphorylase Kinase; domain 1 13 120 - -
Seca8g05394 371 SMART serkin_6 43 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05394 371 FunFam Putative LRR receptor-like serine/threonine-protein kinase 121 327 - -
Seca8g05394 371 Pfam Protein kinase domain 46 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05394 371 CDD STKc_IRAK 49 317 - -
Seca8g05394 371 ProSiteProfiles Protein kinase domain profile. 43 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05394 371 ProSitePatterns Protein kinases ATP-binding region signature. 49 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05394 Seca-Chr8 144928348 144930485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05394 32 334 Receptor kinase-like Gene Family AT1G56120 49.673 2.28e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca8g05394 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05394 - - gmx:100813945 583.948