Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05392 ATGGGACCAATCTCCGCTTCGTTCGGAGAAGACGAGTTGTTCTGCGCCATCGATGCGAGTGGCAAGCAAGATGTTATTTGCTGGGGAAAGAACACGACCTCGCCGCCACTTCTTCCGTCGTCTTCGCCTTATGTCAGCAACAACATCCCTGCCATGTCAGCACTCTCTGGCGGTGAAGGTTTCCTCTGCGGCATTTTAGCGAACACTTCACAAGCGTTTTGTTGGGGAGCTACCATGACCACGAGACTGAGCGTAGATCTCGTTCTCGTGCCCCCTGCGTACCGGAACATAGCTTACTCTAACATCGCCGCCGGCAAGGATCATGTTTGCGCCGTCAGGGGATCCTACTACGCCGATCACGATTCAGGGACCGTGGATTGCTGGGAAATCTCGAGAAACGTTAATAACACCTTGGTGGCGAGGCTTAACGGTTCGTTCAGCATCAATCTGGAGGTGAACCGGGTTGTTTCCGGCGAGGGGTTCACCTGCGGCGAGGTGAGTTCCGGTGGGCTTGTTTGTTGGGGACCCGATTCAGAGAGCTTGGGAGTTTCCAACGTGTCGGAGAGTTTCGCGGTTTTGGCGGCGGGAAGGAACGCTGTTTGCGGTATTTCAAACTTTTCCGGCGATTTGAGGTGCTGGGGCGATCCGGGTTCGTTTTCGGATCCTCCACCGGTGGAAGTTCGGTTGGTGTCTCTCTCCGCAGGGGCACGTCATTTCTGCGGCGTTCGAGAGGATAACCACGTGGTGGAGTGTTGGGGTAGTTTGAATTCCTCTGTGGTTCCCAAAGGTTATGGCTTTATGGCTATTGCTTCTTCGGATAACACGACTTGTGGTATCAGGGAAGATGATCTTCTTCTTGATTGCTGGTTGGTGAACGCTTCTAAGCCTGATTTTGATCCTCCTTTGGAGCTTTCAAGCCCCGGTCTTTGCAGGGCTAGTTCGTGTGGTGTTGGGGAGTTTGCTTTCAATGTGAGTGTGCTCAATGAGCCAGATTTGACTAGCCTCTGTGTTAGACAGGATTTGAGGATTTGTTCACCTTGTGGGTCAAATTGTTCTCAAGGTTTCTTCTTGTCTAGCCCTTGTACTCAGAACGCAGATAGAGTTTGCACTGCTTGTTCTCTTTGCCAGAACAGCTCATGTTGGGGTATTTGTGGACTTCACTCTTCAACAGGGTTGCATTGGCATCAATTACGTAGATGGGTTGTCATAATTGGGTCTTCAGCTTTGGGTTTCTTGCTGATTTTGACTTGTGGGTGTCTTTTTCCGCGTTTGGTAGCCAAAAGAAAAACACAAGGGCAAGGGACAAAGAAACAGTCCAAGTCTTGCATAGGAAAACCGGAACAGGAGGAGGGTGTGAATGTCGGTCTTCATTCTTCTCCTTCTGTTGCTTCCTGTCCTGGGGTGCCTCAGGTTTTCAGACTTACAGAGCTGAAAGATGCTACTAATGGGTTCAAGGAGTTTAATGAGCTTGGGAGGGGAAGTTATGGCTTTGTTTACAAAGCTGCTTTGGCGGATGGTAGAGTGGTTGCTGTTAAGAGAGCAAATGCTGCCACAATAATACACACCAACAACCGTGACTTTGAAATGGAGTTGGAAATCCTATGCAAAATCCGTCACTGTAATATTGTTAACTTGTTGGGTTATTGTGCTGAGATGGGAGAGAGGTTGCTTGTTTATGAGTACATGCCTCATGGGACACTTTATGATCACCTTCATGGTGGCCTTTCTCCTCTTAATTGGAGCCTCAGGCTCAAGATAGCCATGCAGGTTGCAAAAGGCCTTGAGTACCTTCACAAGGAACTATTGCCTCCAATTGTTCATAAGGATCTCAAGAGTTCAAACATTCTCTTGGATTCAGAATGGGCGGCTAGAATTTCAGACTTTGGACTTCTTACTTCAAGTGACAATGATCTTAAAGGGGACCTTGAAAGTGATGTTTACAATTTTGGGATTGTATTACTTGAGATTCTAAGTGGAAGAAAGGCTTGTGACAGAGATTTTACTCCACCTAATGTGGTTGAGTGGGCAGTGCCTTTGATCAAACAAGGGAAAGCAGCTGCCATAATTGATCGTTATGTGGCTCTTCCAAGAAATGTCGAACCTTTGCTTAAGCTTGCTGATATAGCAGAGCATGCTGTGAGAGAGAATCCAAGTGAGCGTCCACCTATGTCAGATGTAGCATCTTGGTTGGAGCAAATTGTGAAGGACGGTTTGATCTTCTAG 2223 0.4795 MGPISASFGEDELFCAIDASGKQDVICWGKNTTSPPLLPSSSPYVSNNIPAMSALSGGEGFLCGILANTSQAFCWGATMTTRLSVDLVLVPPAYRNIAYSNIAAGKDHVCAVRGSYYADHDSGTVDCWEISRNVNNTLVARLNGSFSINLEVNRVVSGEGFTCGEVSSGGLVCWGPDSESLGVSNVSESFAVLAAGRNAVCGISNFSGDLRCWGDPGSFSDPPPVEVRLVSLSAGARHFCGVREDNHVVECWGSLNSSVVPKGYGFMAIASSDNTTCGIREDDLLLDCWLVNASKPDFDPPLELSSPGLCRASSCGVGEFAFNVSVLNEPDLTSLCVRQDLRICSPCGSNCSQGFFLSSPCTQNADRVCTACSLCQNSSCWGICGLHSSTGLHWHQLRRWVVIIGSSALGFLLILTCGCLFPRLVAKRKTQGQGTKKQSKSCIGKPEQEEGVNVGLHSSPSVASCPGVPQVFRLTELKDATNGFKEFNELGRGSYGFVYKAALADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNIVNLLGYCAEMGERLLVYEYMPHGTLYDHLHGGLSPLNWSLRLKIAMQVAKGLEYLHKELLPPIVHKDLKSSNILLDSEWAARISDFGLLTSSDNDLKGDLESDVYNFGIVLLEILSGRKACDRDFTPPNVVEWAVPLIKQGKAAAIIDRYVALPRNVEPLLKLADIAEHAVRENPSERPPMSDVASWLEQIVKDGLIF. 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05392 740 FunFam serine/threonine-protein kinase-like protein CCR1 453 561 - -
Seca8g05392 740 FunFam Serine/threonine-protein kinase-like protein CCR1 562 638 - -
Seca8g05392 740 ProSitePatterns Protein kinases ATP-binding region signature. 490 512 IPR017441 GO:0005524
Seca8g05392 740 Gene3D - 40 322 IPR009091 -
Seca8g05392 740 Pfam Protein tyrosine and serine/threonine kinase 488 635 IPR001245 GO:0004672|GO:0006468
Seca8g05392 740 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 314 369 IPR001368 GO:0005515
Seca8g05392 740 Gene3D Phosphorylase Kinase; domain 1 455 561 - -
Seca8g05392 740 Gene3D Transferase(Phosphotransferase) domain 1 562 638 - -
Seca8g05392 740 Gene3D Transferase(Phosphotransferase) domain 1 639 737 - -
Seca8g05392 740 SUPERFAMILY RCC1/BLIP-II 23 283 IPR009091 -
Seca8g05392 740 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 734 - -
Seca8g05392 740 FunFam Serine/threonine-protein kinase-like protein CCR1 639 737 - -
Seca8g05392 740 SMART serkin_6 484 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05392 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Seca8g05392 740 ProSiteProfiles Protein kinase domain profile. 484 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g05392 740 SUPERFAMILY Protein kinase-like (PK-like) 459 731 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05392 Seca-Chr8 144895777 144897999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05392 1 732 Receptor kinase-like Gene Family AT3G59420 31.360 7.96e-109 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca8g05392 PK_Tyr_Ser-Thr 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05392 - - gmx:100802259 1233.78