Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05380 ATGACGACTCGAATAGCGCCAGGTGTCGGAGCAAATTTGCTGGGTCAGCACTCGGCAGAGAGGAATCAAGATGCTACTGCATACGTTGGCAACCTTGACCCTCAGGTAACCGAGGAGTTATTGTGGGAGCTATTTGTTCAGGCAGGTCCCGTGGTTAATGTCTATGTTCCAAAGGACAGAGTGACCAACCAACATCAAGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAACTGTATGGAAAACCAATACGTGTAAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAACCTTTTCATTGGCAATCTGGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGAGACAGGAAATTCCCGAGGTTTTGGCTTCATTAGCTACGATTCATTCGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACCAAAGGTGAAAGGCATGGTACTCCTGCAGAAAGAGTTTTGGCTGCAAGTAATCCAACTGCACAGAAGAGCAGGCCTCATACATTATTTGCCAGTGGGCCTCCAACTCTTCCCAGTGTTCCTCAGGCTAATGGCACCATTGCTGCTGCAGTGCCTCCCCGTCCCTTTGCTAATGGGGTTGCTCCACCTGCTATTCCTGCCCTCCGTCCACCACCTCCTCAAGCAGCAGCCTTCCATCCTATGCCAGTAGCTGGACAACCAGCATGGCCTCAACATCAGCCAGGTCAAACTATGCTGCCACCACCCGTGATGCCCCCACCTCAAGTACAGCAGTTCAGGCCACCTCCCTCTGGTATGCAGATGCCTCCACCTCCGCAAGCTGTTCCAGCTCCTCCAAGGCCTCTTCCACCACCATCAGTAATGACAAGCCAGCCACCACCTGTTTGGAGACCACCGCCGCCACCACCCCCCCAGCAACAGGGTGGACGTCCTATGGCATATCCTCATTCTTCAATGCCACCACCACCTCCCAATAACCCTGTCTGA 1125 0.4924 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPSVPQANGTIAAAVPPRPFANGVAPPAIPALRPPPPQAAAFHPMPVAGQPAWPQHQPGQTMLPPPVMPPPQVQQFRPPPSGMQMPPPPQAVPAPPRPLPPPSVMTSQPPPVWRPPPPPPPQQQGGRPMAYPHSSMPPPPPNNPV. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05380 374 SMART rrm1_1 26 99 IPR000504 GO:0003723
Seca8g05380 374 SMART rrm1_1 113 187 IPR000504 GO:0003723
Seca8g05380 374 CDD RRM1_SF3B4 28 100 IPR034158 -
Seca8g05380 374 CDD RRM2_SF3B4 111 193 IPR034159 -
Seca8g05380 374 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Seca8g05380 374 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 368 - -
Seca8g05380 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Seca8g05380 374 Gene3D - 16 106 IPR012677 -
Seca8g05380 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Seca8g05380 374 MobiDBLite consensus disorder prediction 255 374 - -
Seca8g05380 374 MobiDBLite consensus disorder prediction 287 374 - -
Seca8g05380 374 Gene3D - 107 204 IPR012677 -
Seca8g05380 374 FunFam splicing factor 3B subunit 4 109 200 - -
Seca8g05380 374 MobiDBLite consensus disorder prediction 255 271 - -
Seca8g05380 374 FunFam Splicing factor 3b subunit 4 16 108 - -
Seca8g05380 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Seca8g05380 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05380 Seca-Chr8 144775729 144785196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05380 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 29.798 2.81e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05380 K12831 - gmx:100791039 576.244