Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05379 ATGATTACATTTATGGATTCAAAGGAGAAATCAGAAGAGGTGGACAGGTGTTTGGATCCTCAGCTATGGCATGCCTGTGCAGGTGGGATGGTGCAGATGCCAGCAGTGAACACTAAGGTGTACTATTTCCCTCAGGGCCACGCTGAACATGCATGTGGACCTGTCAACTTCAGGAATTGCCCCAAGGTTCCACCTTTGGTTCCATGCAGGGTGGCTTCTATCAAATACATGGCTGATCCTGAGACTGATGAGGTCTATGCCAAGCTTAGGCTTGTTCCTTTGAATAGCAATGATGCTGATTATGACCGTGATGTTGTTGGAGGGATTAATGGGCCTGAAACTCAGGACAAGCCTCTTTCATTTGCAAAGACCTTGACCCAATCGGATGCTAACAATGGTGGGGGTTTTTCTGTTCCTAGGTACTGTGCAGAGACAATTTTCCCTCGTTTGGACTATTCTGCGGACCCTCCTGTTCAAAACATTCTTGCTAAGGATGTTCATGGTGAGACATGGAAATTCAGGCACATTTATAGGGGCACGCCAAGGAGGCACCTGTTGACTACTGGTTGGAGTACTTTTGTCAATCACAAGAAGCTTATTGCAGGGGACTCTATTGTGTTCTTGAGAGCAGAAAATGGGGATCTCTGTGTTGGAATTCGAAGAGCCAAAAAGGGTATTGGTGGTGGACCTGAGGTTGGATGGAATCCTGCTGGAGGAAACTGTCCTGTGCCTTATGGTGGATTACCAGCCATTTTGAGAGAGGATGATAACAGAATGCTGAGAAATAGTAACAGCAATGGTTTGAACACAAGTGGTAGTATGATGGGGAGGGCAAAAGTGAGACCAGAAGCAGTTCTTGAAGCTGCAACTCTTGCTGCCAATAAGCAACCTTTTGAGGTTGTTTACTACCCTAGGGCTAGTACTCCAGAGTTTTGTGTGAAGGCCTCATTAGTTGAAGCTTCACTGCAGATTAGGTGGTGTTCTGGAATAAGGTTCAAGATGGCCTTTGAAACTGAGGACTCCTCACGGATAAGTTGGTTTATGGGAATTGTATCTTCAGTTCATGTTGCTGATCCCCTTCTCTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGAGAAGGGTGAGCCCTTGGTTGGTTGAATTGGTAGCAAATATTCCTCCTATCAACCTTTCCCCTTTCTCACCACCACGGAAGAAATTGAGATTGCCCCAACATCCAGATTTCCCCCTTGATGGCCAGATTCCCATGCCAACATTTTCCAGCAACCCTCTAGGTCCCGGCAACCCATTTGTTTGTCTACCCGAAAGTACTCCTGCAGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCGGATCTCCACCTCAATAAAATGCAGTCAGGTCTATATCCGGCTGGTTTCCCGCCTCTTGATCACGCAGCTACACCAACGAGTGTCTCCAATAACCAACTATTTCAAAAGCCAACCATGAGTGAGAGTGTCTCTTGCTTACTATCCATGGCAAGTTCTAATCAGTCTTCAAAGAAACCAGATGATGAGAAGACACCCCACCAGCTTGTGCTTTTCGGCCAAAAAATTCTCACTGAGCAACAGATTTCTCTGAGCAGCTCTGGTGATACAGTCTCCCCAGTTCTAACTGGAAATTATTCCTCAGATGGAAATGCTGATAAAGTGACTAATTTTTCTGATGGTTCTGGTTCTGCTCCTCATCACGAACGCTCCTCTTGTGAGAGGTTCCAATGGTATAGAGATAACCGCCAAGAAACTGAGGCTGGTTTGGAGATTGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGTAGGACAATTAACCTCTCATTGCTTGGATCTTATGATGAACTGTTCAGAAAGTTGGCAGACATGTTTGGCATAGAAAAATCTGAGATGCTAAGTCATGTGCTCTACCGCGATATAACAGGAGCAGTCAAACACATTGGAGATGAACCTTTCAGTAACTTTGCAAGAACAGCGAGGAGGTTGACTATTCTAATGGATTCTAGCAGCGACAATGTAGGAGTGTAG 2091 0.4548 MITFMDSKEKSEEVDRCLDPQLWHACAGGMVQMPAVNTKVYYFPQGHAEHACGPVNFRNCPKVPPLVPCRVASIKYMADPETDEVYAKLRLVPLNSNDADYDRDVVGGINGPETQDKPLSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKKGIGGGPEVGWNPAGGNCPVPYGGLPAILREDDNRMLRNSNSNGLNTSGSMMGRAKVRPEAVLEAATLAANKQPFEVVYYPRASTPEFCVKASLVEASLQIRWCSGIRFKMAFETEDSSRISWFMGIVSSVHVADPLLWPNSPWRLLQVTWDEPDLLQNVRRVSPWLVELVANIPPINLSPFSPPRKKLRLPQHPDFPLDGQIPMPTFSSNPLGPGNPFVCLPESTPAGMQGARHAHYGLSLSDLHLNKMQSGLYPAGFPPLDHAATPTSVSNNQLFQKPTMSESVSCLLSMASSNQSSKKPDDEKTPHQLVLFGQKILTEQQISLSSSGDTVSPVLTGNYSSDGNADKVTNFSDGSGSAPHHERSSCERFQWYRDNRQETEAGLEIGHCKVFMESEDVGRTINLSLLGSYDELFRKLADMFGIEKSEMLSHVLYRDITGAVKHIGDEPFSNFARTARRLTILMDSSSDNVGV. 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05379 696 FunFam Auxin response factor 119 223 - -
Seca8g05379 696 SUPERFAMILY DNA-binding pseudobarrel domain 115 222 IPR015300 -
Seca8g05379 696 Gene3D - 325 398 - -
Seca8g05379 696 CDD B3_DNA 120 221 IPR003340 GO:0003677
Seca8g05379 696 Gene3D - 119 223 IPR015300 -
Seca8g05379 696 MobiDBLite consensus disorder prediction 563 584 - -
Seca8g05379 696 MobiDBLite consensus disorder prediction 563 589 - -
Seca8g05379 696 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Seca8g05379 696 SMART B3_2 121 223 IPR003340 GO:0003677
Seca8g05379 696 FunFam Auxin response factor 326 399 - -
Seca8g05379 696 Gene3D - 609 694 - -
Seca8g05379 696 ProSiteProfiles PB1 domain profile. 610 693 IPR000270 GO:0005515
Seca8g05379 696 Pfam Auxin response factor 288 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca8g05379 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 688 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca8g05379 696 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05379 Seca-Chr8 144763792 144766553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05379 1 696 B3 DNA Binding Superfamily AT4G30080 57.486 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca8g05379 B3 5.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05379 - - gmx:100796522 1168.3