Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05373 ATGTCTACCTCTGCGGCTTCTCTAGCACTCCCCACTCTCCAAACCAAACAACCTCTGTGTTCTCCCCAACGTTTCTCTTCTTCCCTCTCCCTCTCTATCAACCCTAACTTCAAGCCGGTGTCTATTTCCGCGGCTTTTCTTCGTCCAACACTGTCGCTGTCGTCTCGTTTCGTTTCCCGTGTTGCCCTCTCCTCCGAATTCGACCAGGAAGAGGACACCTTCAGCGATGGTGACAGCCCCAACTACTCCCCTGACCTCAAGCTCTTCGTCGGTAACCTTCCTTTCAGTGTCGACAGTGCCCAACTCGCTGAGCTTTTCGAAAACGCTGGGAATGTAGAGATGGTTGAGGTGATTTATGATAAAATGACTGGGAAAAGCAGGGGTTTTGGTTTTGTGACCATGTCTTCGGCTGAGGAAGTTGAAGCAGCTGCTCAGCAATTCAATGGCTATGAACTGGATGGAAGGCAGTTGAGAGTAAATTCTGGACCACCACCATCTCGGAGCGAGAATTCTCGTTTTAGAGCTCCTTCCAGAGGTGGTTCTTTTTCAGATAATGATAACCGTGTTCATGTTGGTAATCTTGCTTGGGGTGTTGACAATTTAGCACTTGAGTCATTGTTTCGCGAACAAGGAAAGGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAGAGGCTTTGGATTTGTGACCTACAGTAGCCCAGAAGAGGTCAGCAGTGCTATTGAGTCCTTAGATGGTGCGGACTTGAATGGCAGAGCTATAAGAGTCTCGTTAGCAGATGCTAAGCCCAGGCGTCAATTTTGA 816 0.4816 MSTSAASLALPTLQTKQPLCSPQRFSSSLSLSINPNFKPVSISAAFLRPTLSLSSRFVSRVALSSEFDQEEDTFSDGDSPNYSPDLKLFVGNLPFSVDSAQLAELFENAGNVEMVEVIYDKMTGKSRGFGFVTMSSAEEVEAAAQQFNGYELDGRQLRVNSGPPPSRSENSRFRAPSRGGSFSDNDNRVHVGNLAWGVDNLALESLFREQGKVLEAKVIYDRESGRSRGFGFVTYSSPEEVSSAIESLDGADLNGRAIRVSLADAKPRRQF. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05373 271 PANTHER OS02G0815200 PROTEIN 20 269 - -
Seca8g05373 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 265 IPR000504 GO:0003723
Seca8g05373 271 Gene3D - 162 270 IPR012677 -
Seca8g05373 271 MobiDBLite consensus disorder prediction 155 185 - -
Seca8g05373 271 SMART rrm1_1 188 261 IPR000504 GO:0003723
Seca8g05373 271 SMART rrm1_1 87 160 IPR000504 GO:0003723
Seca8g05373 271 FunFam 28 kDa ribonucleoprotein, chloroplastic 182 269 - -
Seca8g05373 271 CDD RRM2_NsCP33_like 188 263 - -
Seca8g05373 271 MobiDBLite consensus disorder prediction 161 185 - -
Seca8g05373 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Seca8g05373 271 SUPERFAMILY RNA-binding domain, RBD 184 270 IPR035979 GO:0003676
Seca8g05373 271 FunFam Ribonucleoprotein A, chloroplastic 63 181 - -
Seca8g05373 271 Gene3D - 58 161 IPR012677 -
Seca8g05373 271 SUPERFAMILY RNA-binding domain, RBD 80 182 IPR035979 GO:0003676
Seca8g05373 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Seca8g05373 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05373 Seca-Chr8 144654180 144656745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05373 88 270 Eukaryotic Initiation Factors Gene Family AT4G34110 32.240 8.58e-20 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05373 - - gmx:100786275 390.578