Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05367 ATGGCCGCAGCAACCAATGGAAACCATGACGCCACCACTTTTTGCTTGACCAGTGCTGGAGGCGTTACTGGTGGTGACCCTCTCAACTGGGGAGCAGCCGCTGAGTCACTCAAGGGGAGCCACTTGGATGAGGTGAAGCGCATGGTGGCTGAGTACCGGAAGCCGGTGGTGAGGATCGGCGGCGAGACCCTGACAATCGCTCAGGTGGCTGCCATCGCCACACATGACCAAGGCGTTAAGGTAGAACTGTCGGAGTCAGCCAGGGCTGGTGTTAAGGCCAGTAGTGACTGGGTGATGGACAGCATGAACAAAGGAACGGACAGTTACGGCGTCACCACCGGTTTCGGTGCCACCTCTCACCGCCGAACCAAACAAGGCGGTGCCCTGCAGAAGGAGCTTATTAGGTTTTTAAATGCTGGAATATTTGGTAATGGTACAGAGTCCAATTGTACCCTACCACACACCGCAACTAGAGCAGCCATGCTAGTGAGAATTAACACTCTTCTTCAAGGGTACTCAGGCATTAGATTTGAGATTTTGGAAGCTATCACCAAGCTCCTAAACAACAACATTACCCCATGTTTGCCACTTCGGGGTACCATTACAGCTTCTGGTGACCTTGTTCCCCTTTCTTACATTGCTGGTTTGTTAACTGGTCGACCCAACTCCAAGGCTGTTGGACCCTCTGGAGAAATTCTCAATGCTAAGGAAGCTTTTCAAGTGGCAAATATTGGTACTGAGTTTTTTGAATTGCAACCTAAGGAAGGTCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGCTTAGCTTCTATGGTTCTCTTTGAGGCAAACATATTGGCTGTCTTGTCTGAAGTCCTTTCAGCAATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTCACAGACCATTTGACTCATAAGCTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATCATGGAACACATTTTGGATGGAAGCTCTTATATTAAAGCAGCTAAGAAGTTGCACGAGATGGATCCTCTGCAAAAGCCTAAACAAGATCGTTATGCCCTTAGAACTTCACCACAATGGCTTGGTCCTTTGATTGAAGTGATCAGATTTTCAACCAAATCAATTGAGAGAGAGATAAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCCTTGCATGGTGGTAACTTCCAGGGAACCCCTATTGGAGTCTCAATGGATAACACACGTTTGGCTCTCGCTTCAATTGGTAAACTCATGTTTGCACAGTTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCAAGCTTGGATTATGGTTTCAAAGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAACTCCAATATCTTGCAAACCCAGTAACAAGCCATGTTCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCATCTAGAAAAACAAATGAGTCTATTGAGATTCTGAAACTCATGTCTTCCACATTCTTGATTGCACTTTGTCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACAATCAAGAATACTGTAAGCCAAGTTGCCAAGAGGACACTTACCACAGGTGTTAATGGAGAACTTCATCCTTCTAGATTTTGTGAGAAAGATTTGCTGAAAGTTGTCGATAGGGAGTATGTATTTGCATATGTTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAATTAAGGCAGGTGCTTGTGGACCATGCATTAGCAAATGCAGAGAGCGAGAAGAACTTGAACACTTCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAATTAAAGGCTCTCTTACCAAAGGAGGTTGAAGGTGCAAGGATTGCATATGAGAATGACCAATGTGCAATTCCGAACAAGATTAAGGAGTGTAGGTCTTACCCATTGTACAAGTTTGTGAGAGAGGAGTTGGGGACTAAGTTGCTAACAGGAGAAAAGGTCATATCACCAGGTGAGGAGTGTGACAAACTATTCACTGCTATGTGCCAAGGTAAAATTATTGATCCTATTTTGGAATGCCTTGGAGAGTGGAATGGTGCTCCTATTCCAATCTGTTAG 2154 0.4461 MAAATNGNHDATTFCLTSAGGVTGGDPLNWGAAAESLKGSHLDEVKRMVAEYRKPVVRIGGETLTIAQVAAIATHDQGVKVELSESARAGVKASSDWVMDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILNAKEAFQVANIGTEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLIALCQAIDLRHLEENLKNTIKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYVDDPCSATYPLMQKLRQVLVDHALANAESEKNLNTSIFQKIATFEDELKALLPKEVEGARIAYENDQCAIPNKIKECRSYPLYKFVREELGTKLLTGEKVISPGEECDKLFTAMCQGKIIDPILECLGEWNGAPIPIC. 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05367 717 Pfam Aromatic amino acid lyase 64 539 IPR001106 -
Seca8g05367 717 Gene3D - 530 651 IPR023144 -
Seca8g05367 717 FunFam Phenylalanine ammonia-lyase 264 572 - -
Seca8g05367 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824
Seca8g05367 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841
Seca8g05367 717 FunFam Phenylalanine ammonia-lyase 530 651 - -
Seca8g05367 717 Gene3D - 18 263 IPR024083 -
Seca8g05367 717 FunFam Phenylalanine ammonia-lyase 17 263 - -
Seca8g05367 717 PANTHER HISTIDINE AMMONIA-LYASE 21 717 IPR001106 -
Seca8g05367 717 NCBIfam phenylalanine ammonia-lyase 26 706 IPR005922 GO:0005737|GO:0006559|GO:0016841
Seca8g05367 717 CDD PAL-HAL 62 527 IPR001106 -
Seca8g05367 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05367 Seca-Chr8 144481895 144485930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05367 26 717 Monolignol Biosynthesis Gene Families AT2G37040 85.116 0.0 1253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05367 K10775 - gmx:100302735 1315.06