Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05362 ATGAAACTTGAGTATGACAATGAGCCATTTCCCTTGGAGTCTAAGGGTGAATATGTGACACCAAAAAGTTCTAGGAGGAAAGATAGAAGAAAGCATCAGAGGATGTGGACTCTCTCTGAAGTAATGAAGTTAGTTGATGGGATATCTGAATATGGAGTTGGTCGATGGACTGATATAAAGAGGTTTTTGTTTTCTTCTTCAAGCTACCGAACTCCCATAGATCTCAGGGACAAGTGGCGTAACCTTTTGAGAGCCAGTTCTGCACAGAAATTTAACAATAAAGAGGCTGAGCAAAATGACGAGCTTGCCCTACGTCCGTTACCATCTAATGTGGTACGCCGTGTGTGTGAATTGGCTAAAATTCACCCATACCCAAGGCAACGTGGCTCAAAGAAATCATGCGTTAGCCCAGTTGGTTCTTCTTCTGTGATTGCTAGTCAAAATAAAGGTTCTCCCGTAAGTCTTAGCAGAAGAGATGTACGTAGGAAGAAGAGTACTTAG 501 0.4232 MKLEYDNEPFPLESKGEYVTPKSSRRKDRRKHQRMWTLSEVMKLVDGISEYGVGRWTDIKRFLFSSSSYRTPIDLRDKWRNLLRASSAQKFNNKEAEQNDELALRPLPSNVVRRVCELAKIHPYPRQRGSKKSCVSPVGSSSVIASQNKGSPVSLSRRDVRRKKST. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05362 166 CDD SANT_TRF 34 84 - -
Seca8g05362 166 Gene3D - 22 134 - -
Seca8g05362 166 SMART sant 32 85 IPR001005 -
Seca8g05362 166 MobiDBLite consensus disorder prediction 1 32 - -
Seca8g05362 166 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Seca8g05362 166 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 87 IPR017930 -
Seca8g05362 166 ProSiteProfiles Myb-like domain profile. 28 83 IPR001005 -
Seca8g05362 166 MobiDBLite consensus disorder prediction 133 154 - -
Seca8g05362 166 SUPERFAMILY Homeodomain-like 30 111 IPR009057 -
Seca8g05362 166 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 14 141 - -
Seca8g05362 166 MobiDBLite consensus disorder prediction 126 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05362 Seca-Chr8 144446460 144448082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05362 36 94 Single Myb Histone (SMH) Gene Family AT1G72740 39.344 5.18e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca8g05362 Myb_DNA-binding 2.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05362 - - aprc:113871152 253.832