Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05360 ATGGGTTCTACTCACCAAAGTCCATGCACCAAGTTGAGTACCTGTAATCCAAACACAGCAACCCAAAATATGCACGTTTATGGCGCTTTGCTTATTGTTGCATTGAGTACTCTCCTGATCTTCATTTACAACTGTTCTGATCAAGTTCTAGCTACACGAGAAAGAAGGAAGGCTAAATCTAGGGAAGCTGCGGCAAGACAAGTAAGAGAAACTGTACAAGCTCGAGAAAGGTGGAAAGCAGCAAAAGATGCTGCTAAGAGGGGTAAGATGGGATTGCAAGAGCAGTTATCCCGCACCTTTTCTCGCAGAAAATCAATAAGGCAAGCAGAGCAATTAAAGGTTTTTAATCAAGCTAAACCTGCTACGGGCGATTCACTTTTTGCACCAATGCCTTCAAATACTTCAAGCACATCTGAGCAGTCATCTACAGCTACAAACTCCCAAAAAGGGGAACCTAGCAACCTTACTAAAATGTTGAATTCCCTTGAGAATGACCCTAATAGCAATGAAGGATTCAATCTACGGATTGGAGACAAAAATATTAAGAAGCAGATGCCAAAGGGAAAACAATTACATACGCAAAGCCAAATTTTAAGGTATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAACAAGAGAAAAACAAGAATTTGACTTTCTCAGGAGTGATTTCAATGGCTACTGAAGGTGAGGTGAGAACAAGGCCTGTGATTGAGGTAGCTTTCAAAGATTTAACTCTCACTTTGAAAGGGAAAAGAAAACATATAATGAGGTGTGTGACGGGTAAAATCATGCCTGGTCGAGTTTCAGCTGTGATGGGTCCCTCTGGAGCAGGCAAAACTACATTTCTTTCTGCTTTGGCAGGGAAAATAAGAGGATGCACTGTGACTGGCTCAATTCTAATCAATGGAAAACCTGAATCCATTCACTGTTATCAGAAAATTATTGGTTTTGTGCCACAGGATGATATTGTGCATGGGAACTTGACAGTGGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGACTGTCTGCGGACATGCCAAAACCAGATAAGGTTCTGATTGTTGAAAGAGTAATTGAGTCCTTGGGACTCCAGGCAGTGAGGGATTCCCTTGTTGGGACTGTAGAGAAGCGAGGTATATCTGGAGGGCAACGAAAACGTGTAAATGTAGGGCTGGAGATGGTCATGGAGCCTTCTTTATTAATCTTAGATGAGCCTACAACTGGTCTGGACAGTGCATCTTCCACTTTACTACTTAAAGCACTTCGTCGTGAAGCTCTTGAAGGGGTAAACATTTGCATGGTACTTCACCAACCAAGCTATACTTTGTTCAGAATGTTTGATGATATAATATTTCTAGCCAAAGGTGGCCTTACTGCATACCATGGTCCTGTCAAAAAAGTAGAAGAATACTTTGCTAGCATTGGAATCACTGTGCCTGATCGTGTGAATCCTCCAGACCATTTCATTGATATTCTGGAGGGTTTAGTGAAACCAAGTTCAGGTGTGACTCATCAACAACTTCCTGTCAGATGGATGCTCCATAATGGTTACCCAGTACCACCAGATATGCTTCATTTTGCTGATCAAATTGCTGCTTCATCATCTTCCTCAAATACAAATGATGCAACAAAGGGTACTGAAGAAGCTACTGACCAATCCTTTGCTGGAGAGTTTTGGGAGGATATGAAGAGTAATGTTCAGATCCAACGAGATCATATAGAGGCGACCTTCTTAAAGACTAAGGACTTATCTAACCGAAGAACTCCTGGTGTAGCCCGGCAATATAGATACTACCTTGGGAGGGTTTGTAAGCAGCAGCTCCGAGAAGCAAAATCACAAGCAGTTGACTATCTCCTTTTATTAGTTGCTGGTTCTATCTTAGGAACTCTTACTAAAGTGAATGATGAAACATTTGGGTCTCTTGGATATACATATACTGTCATTGCTGTCTCTCTACTTTGCAAGATTGCAGCTCTCAGATCATTTTCTCTGGATAAATTACAATACTGGAGGGAGAGTGCATCTGGAATCAGCAGTCTGGCTCATTTTTTGTCCAAAGACACACTTGATCTTTTCAATACAATCATCAAACCTGTGGTTTTTCTGTCCATGTTCTATTTCTTTAGCAATCCAAGGTCAAGCTTTGCAAGTAATTATGTGGTTTTGCTCTGCCTTGTGTACTGTGTGACTGGCATGGCTTATGGATTAGCAATTTATTTTGAGCCTGCTCCAGCTCAGCTGTGGGCAGTGCTTCTCCCTGTTGTTATGACTCTCATTGCGAATCAGAAAAGGGATACTACCTTTATGAAGATCCTAGTAAAGTTGTGCTACCCAAATTGGGCTTTGGAGGCCTTTATCATTGCAAATGCTGAAAGGTACACTGGGGTGTGGCTGATAACTCGTTGTAGTTCACTGATGAGTAGTGGTTATGACGTCAGTGATTGGCCTATATGTCTGGCTGTCCTCATTCTTTATGGTATAGTTGCCCGAGTTATATCCTACTTTTGTCTGGTGATCACCCAAAAGAAGTGA 2538 0.4177 MGSTHQSPCTKLSTCNPNTATQNMHVYGALLIVALSTLLIFIYNCSDQVLATRERRKAKSREAAARQVRETVQARERWKAAKDAAKRGKMGLQEQLSRTFSRRKSIRQAEQLKVFNQAKPATGDSLFAPMPSNTSSTSEQSSTATNSQKGEPSNLTKMLNSLENDPNSNEGFNLRIGDKNIKKQMPKGKQLHTQSQILRYAYGQIEKEKAQQEKNKNLTFSGVISMATEGEVRTRPVIEVAFKDLTLTLKGKRKHIMRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKIRGCTVTGSILINGKPESIHCYQKIIGFVPQDDIVHGNLTVEENLRFSARCRLSADMPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFASIGITVPDRVNPPDHFIDILEGLVKPSSGVTHQQLPVRWMLHNGYPVPPDMLHFADQIAASSSSSNTNDATKGTEEATDQSFAGEFWEDMKSNVQIQRDHIEATFLKTKDLSNRRTPGVARQYRYYLGRVCKQQLREAKSQAVDYLLLLVAGSILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSLDKLQYWRESASGISSLAHFLSKDTLDLFNTIIKPVVFLSMFYFFSNPRSSFASNYVVLLCLVYCVTGMAYGLAIYFEPAPAQLWAVLLPVVMTLIANQKRDTTFMKILVKLCYPNWALEAFIIANAERYTGVWLITRCSSLMSSGYDVSDWPICLAVLILYGIVARVISYFCLVITQKK. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05360 845 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 463 IPR027417 -
Seca8g05360 845 ProSitePatterns ABC transporters family signature. 381 395 IPR017871 GO:0005524|GO:0016887
Seca8g05360 845 SMART AAA_5 266 458 IPR003593 GO:0016887
Seca8g05360 845 MobiDBLite consensus disorder prediction 79 103 - -
Seca8g05360 845 CDD ABCG_EPDR 238 464 - -
Seca8g05360 845 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 190 832 - -
Seca8g05360 845 Pfam ABC-2 type transporter 438 845 IPR043926 GO:0140359
Seca8g05360 845 FunFam ABC transporter G family member 24 234 476 - -
Seca8g05360 845 Gene3D - 230 478 IPR027417 -
Seca8g05360 845 MobiDBLite consensus disorder prediction 120 173 - -
Seca8g05360 845 MobiDBLite consensus disorder prediction 127 173 - -
Seca8g05360 845 Pfam ABC transporter 260 408 IPR003439 GO:0005524
Seca8g05360 845 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 240 481 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05360 Seca-Chr8 144425466 144437410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05360 267 460 Calmodulin-binding Proteins AT2G36910 28.713 2.77e-09 59.3