Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05355 ATGGCTTCAGAAGTAGTAGCTCTCCACACCTTTTCTCAGTCAGACACTAAACCCTCCATCACTCCCACTGTCACCACCGCAACTACCACCGTCTCCGACCCCAATGCGCAACTCTCCGTCGCCAGAAGATCCTCCAACACCGCCCGCTCCACCAAGGACCGCCACACCAAGGTTAACGGCCGCGGTCGCCGCGTCCGCATGCCGCCCCTCTGCGCCGCCAGAATATTCCAGCTCACCCGCGAGCTCGGCCACCGCTCCGACGGCGAGACCATCGAATGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCTGCCACCGGCACCGGCACTGTCCCCGCCGCTCCCGTCTCCACCGTCTCCCCCTCTGCCTCCTCCTCCGCGCCCTCCGTCCCCTGCCGCGTCCAGCCCGTATCGACTACCGGCGCCGCCCAGGGCATGTTCGCCGTCGCTATGCCGCAGCCGAGTTGCCGGCTTGACCTCTGCCAGCCGGCGGTAATGGAGTACTCCGCGGCGACGGCAGTGAACGGGTACCGGCACATGCCGTTCACGGCGCTGCTGTTGCAGCCGACGACGGCGGAGGAGAATCAGCAAGAGGAGACTCTGAGCGAACAATGA 615 0.6602 MASEVVALHTFSQSDTKPSITPTVTTATTTVSDPNAQLSVARRSSNTARSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAPVSTVSPSASSSAPSVPCRVQPVSTTGAAQGMFAVAMPQPSCRLDLCQPAVMEYSAATAVNGYRHMPFTALLLQPTTAEENQQEETLSEQ. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05355 204 MobiDBLite consensus disorder prediction 39 63 - -
Seca8g05355 204 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 135 IPR005333 GO:0003700
Seca8g05355 204 ProSiteProfiles TCP domain profile. 51 105 IPR017887 -
Seca8g05355 204 Pfam TCP family transcription factor 50 127 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05355 Seca-Chr8 144348954 144349568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05355 51 191 TCP Transcription Factor Family AT2G37000 58.156 2.42e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca8g05355 TCP 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05355 - - cam:101510590 258.07