Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05340 ATGTTTAGGTCTTTTGCTGGGAAGATACAAAAGGGTCTTTCACTCTGTGTACACAGAAGGCCCTCACTCAGCTACTTCAATGAAGAGGTAGTGGCAGATGAAGTTAGGAAAGGCTATTTTGCTGTTGTTGCAATGAAGGATGGAGAAACCAAGAGGTTCATTGTTAAATTAGACTACTTGAGTGATCCTGCATTCATAAGACTGCTAGACCAAGCTCGGGAAGAGTATGGTTTCATACAAAAGGGAACTCTTGCAGTTCCATGTCTGCCTCAAGATTTACAGAACATTCTAGATGCTCGGAGATGA 306 0.4216 MFRSFAGKIQKGLSLCVHRRPSLSYFNEEVVADEVRKGYFAVVAMKDGETKRFIVKLDYLSDPAFIRLLDQAREEYGFIQKGTLAVPCLPQDLQNILDARR. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05340 101 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 24 95 IPR003676 GO:0009733
Seca8g05340 101 Pfam Auxin responsive protein 29 98 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05340 Seca-Chr8 144263208 144263513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05340 19 88 Calmodulin-binding Proteins AT4G34750 37.143 5.41e-10 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05340 - K14488 gmx:106795483 139.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05340 8 144263208 144263513 Seca8g05340 8 144263208 144263513 ECH
Seca8g05340 8 144263208 144263513 Seca8g05340 8 144263208 144263513 PCT