Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05339 ATGATGGTTTGGTCTTTATTTGGCAAGATACACGGAGTATTCTTTGCACAGAGGAAATTGCAAGCACTCATCAGCAGCTTCAATGAAGATAGGGCAATGGAGATGCCTGCAGGTGATGTAATGGAAGGACATTTTGTAGTTTTTGCCAACAAGGATCAACTAACCAAACGGTTTGCTGTTGATTTGCACTATTTGAGTGACCCTGCTTTTCTGAGACTGCTGGAACGGGCAAAAGAAGAGTATGGCTTCAAACAGAGAGGGCCTCTGGTAATTCCTTGCCATCCTCAAGAACTAGAGAACATTCTAACCAGAAGGACGTATAGGTGA 327 0.4343 MMVWSLFGKIHGVFFAQRKLQALISSFNEDRAMEMPAGDVMEGHFVVFANKDQLTKRFAVDLHYLSDPAFLRLLERAKEEYGFKQRGPLVIPCHPQELENILTRRTYR. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05339 108 Pfam Auxin responsive protein 34 103 IPR003676 GO:0009733
Seca8g05339 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 28 101 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05339 Seca-Chr8 144251656 144251982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05339 14 103 Calmodulin-binding Proteins AT4G34750 37.778 5.31e-13 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05339 - K14488 gmx:100809715 131.339