Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05330 ATGGACCAATGGGAGCAGAAGTTTGAGAGGCTTATGCTACATAACAACTTGCCTGTCTTGCCACCTGAACCTGCAAGAGAGAATGTTAATGCCAATGAAGACTTTGTCGTCACTCCTCTGCCATTGTTTCATGGAAGCTTCATCGCATTTTTCTGCATCAAGCTCTTCATACAGTATCTAGGGTTCACCCATGAGATTGCAGATTTGTTCTTCTATCTAGCTAGGTACACTGTTCGTTCCTTTGGTATTAGAAGAAATGAAAAGATTGCATGCTATGTCACTGTTAGAGGCGACAAGGCAATGCAACTATTGGAGAGTGGGTTGAAGGTGAAGGAATGTGAATTGTTAAGGAGAAACTTTAGCGATAGTGGTTGTTTTGGCTTTGGTATTCAAGAGCATATTGATTTGGGAATCAATTAA 420 0.4095 MDQWEQKFERLMLHNNLPVLPPEPARENVNANEDFVVTPLPLFHGSFIAFFCIKLFIQYLGFTHEIADLFFYLARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKECELLRRNFSDSGCFGFGIQEHIDLGIN. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05330 139 Gene3D - 68 139 IPR022803 -
Seca8g05330 139 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 71 139 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca8g05330 139 Pfam ribosomal L5P family C-terminus 88 136 IPR031309 -
Seca8g05330 139 SUPERFAMILY RL5-like 71 136 IPR022803 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05330 Seca-Chr8 144139807 144141291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05330 71 139 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 91.304 2.02e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05330 K02868 - mof:131149794 130.183