Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca8g05326 | ATGTCACAAGATTCTGAGGAGATAAAAACCATTGAGCAGTGGAGATGGTCTGAAATGCAAGGCCTTGAGCTAGTGTCTTCTGCTCCTTCTATTTCCAACCCACCAACACCAATATTGGAGGAGGAAAGAGGAGACTCCAAGGAAGAGGAAGAGCCTTCTACACAAGAGGGAGAGACAAGGGAAATGGAGGAGGCCTCAGTACCCAAGAAAAGTGGTGATGGTCTTTCTAATGGGAACACAAGTGGAAGTAGTAGTAGTATTAATGGAGAGAAGCCTGAGAGTGTTCCCTCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATGGTTTGGATTACATTCTCATGGCAATTGGAACTGTTGGAGCATTTGTACATGGTTGTTCCTTGCCACTGTTTCTTCGGTTCTTCGCTGATCTTGTAAATTCTTTTGGTTCCAATGCCAATAATTTGGATAAGATGACCCAGGAAGTGGTGAAGTATGCATTTTACTTCCTGGTAGTGGGTGCTGCTATATGGGCATCTTCATGGGCAGAGATTTCATGCTGGATGTGGACCGGAGAGCGCCAATCAACGAGGATGAGGATAAAGTATCTTGAAGCTGCCTTAGACCAGGACATTCAATTCTTTGACACAGAGGTTCGAACATCCGATGTTGTTTTTGCCATTAACACTGATGCTGTGATGGTACAAGATGCCATAAGCGAAAAGTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGATTTGCTGTGGGTTTCACTGCTGTTTGGCAATTAGCACTGGTTACTCTCGCTGTAGTCCCTATGATAGCAGTAATCGGAGCCATTCACACCACCACATTGGCCAAGCTATCGAGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGCAGAACAGACTATTGTTCAAATTCGAGTGGTGTTGGCATTTGTTGGGGAGAATAGAGCACTACAGGCTTATTCCTCTGCTTTGAGGATTGCTCAGAAGATTGGCTACAGGAGTGGTTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCTCTTTTGCTATGGTATGGAGGCTATCTAGTTAGGCACCACTACACCAATGGAGGACTTGCCATTGCCACCATGTTTTCTGTTATGATTGGTGGATTGGCTTTAGGCCAGTCTGCACCTAGCATGACTGCGTTTACAAAGGCCAGAGTTGCAGCTGCAAAAATCTTCCGTGTGATTGATCACAAGCCGAGTATAGACAAAGAGAGTGAATCAGGTGTGGAGTTAGACACTGTTACAGGACTAGTAGAGCTGAAAAATGTGGACTTTTCATACCCATCAAGGCCAGAGGTTCGGATCCTTAGCAATTTCAACTTGAATGTGCCTGCTGGTAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCCGGCAAGAGCACAGTTGTCTCTCTTATTGAGAGATTCTATGATCCTTCTTCAGGACAAGTTTTGCTTGATGGGCATGATGTTAAGACATTGAAGCTTAGGTGGTTGAGACAGCAAATAGGACTAGTGAGCCAAGAGCCTGCTTTGTTTGCTACCACAATTAGAGAAAACATACTATTGGGTAGGCCTGATGCTGACCAGGTTGAAATTGAAGAAGCTGCAAGAGTAGCTAATGCTCATTCTTTCATCATCAAACTTCCTGATGGCTATGATACTCAGGTAGGAGAGAGAGGGCTGCAACTTTCAGGTGGACAAAAGCAGAGAATAGCAATTGCAAGGGCAATGCTGAAAAACCCTGCAATACTTCTCCTAGATGAGGCAACAAGTGCATTGGATTCTGAGTCAGAAAAGTTGGTTCAAGAAGCACTTGATCGGTTCATGATTGGTAGAACAACTCTTGTAATTGCACATCGCCTCTCCACTATCCGCAAAGCTGACCTTGTAGCTGTACTTCAACAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTTGCTAAAGGTGAAAATGGAATCTATGCCAAGCTTATCCGAATGCAGGAAATGGCTCATGAAAGTGCTATGAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCTAGTGCTAGAAACTCTGTAAGCTCACCCATAATTGCTAGGAATTCTTCTTATGGCCGGTCACCATACTCAAGGAGGCTTTCTGACTTCTCTACATCTGATTTTAGCCTGTCCCTTGATGTATCACATCCAAATTACAGGCATGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTCTGGAGACTTGCAAAGATGAACTCTCCTGAATGGCTTTATGCTTTGATGGGTTCTATAGGTTCTGTTGTTTGTGGATCTCTCAGTGCATTCTTTGCTTATGTTCTCAGTGCTGTCCTCAGTGTCTATTACAATCCAAACCACAGACACATGATTAGAGAAATTGAAAAATACTGCTACTTGTTAATTGGGCTTTCATCAGCTGCACTTCTCTTCAATACATTGCAGCACTCCTTCTGGGATATTGTTGGTGAAAATCTCACAAAACGGGTTAGGGAGAAAATGTTAACTGCAGTGCTTAAAAATGAAATGGCATGGTTTGATCAAGAGGAAAATGAGAGTGCCCGGATTGCAGCCAGGCTAGCTCTTGATGCTAACAATGTCAGATCAGCCATTGGAGATAGGATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCATGTACTGCAGGGTTTGTATTGCAGTGGCGCCTTGCCCTTGTCCTTGTAGCTGTCTTCCCTGTTGTGGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCCAAGGCCACACAACTAGCTGGGGAGGCTATAGCCAATGTAAGGACTGTTGCTGCCTTTAACTCAGAAAAGAAAATTGTTGGCCTTTTCTCCTCCAACCTTGAAATTCCACTGCGGCGCTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATATGGGATAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCATGGTATATCTGATTTCTCTAAGACAATAAGAGTTTTTATGGTCCTCATGGTTTCTGCTAATGGTGCTGCTGAAACTTTAACCTTGGCTCCTGACTTCATCAAAGGAGGTAGAGCCATGAGGTCAGTTTTTGAACTCCTTGACCGTAGAACTGAAATTGAACCAGATGATCCAGATGCTACACCTGTCCCTGATCGTCTTCGTGGTGAAGTAGAACTTAAACATGTTGATTTCTCTTATCCCACTAGGCCAGATATGCCAGTTTTTCGTGACCTTAGTCTTCGTGCAAGAGCAGGCAAAACTCTTGCTCTTGTAGGGCCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTCATACAAAGATTCTATGATCCAACATCTGGCCGAGTCATGATTGATGGAAAGGACATAAGGAAATACAATCTCAAGTCCCTTAGAAGGCACATTGCTGTGGTACCTCAAGAGCCATGCTTGTTTGCTGCTACAATTTATGAAAACATTGCTTATGGGCATGACTCAGTTACTGAAGCTGAGATTGTTGAGGCTGCAACTCTTGCAAATGCTCACAAGTTCATATCTTCTCTGCCAGATGGATACAAGACATTTGTTGGTGAGAGAGGAGTTCAACTATCTGGAGGACAGAAGCAGAGAATAGCAATTGCTCGTGCTTTTGTGAGGAAAGCAGAACTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAAGAGGCCCTAGACCGTGCTTGTAAAGAAAAAACTACTATTATTGTTGCACACAGGCTATCAACTATCAGGAATGCCAACCTCATTGCAGTGATTGATGATGGCAAAGTAGCAGAACAAGGCTCCCATTCACAGTTGTTGAAAAATCACCCTGATGGGATCTATGCTCGCATGATTCAACTTCAAAGGTTCACAAATAGCCAAGTCATTGGGATGGCCTCAGGTTCAAGTTCTTCAGCAAGACCAAAAGATGATGAAAAAGAAGGCTAA | 4083 | 0.4386 | MSQDSEEIKTIEQWRWSEMQGLELVSSAPSISNPPTPILEEERGDSKEEEEPSTQEGETREMEEASVPKKSGDGLSNGNTSGSSSSINGEKPESVPSVGFGELFRFADGLDYILMAIGTVGAFVHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALDQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFAVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIAEQTIVQIRVVLAFVGENRALQAYSSALRIAQKIGYRSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFSVMIGGLALGQSAPSMTAFTKARVAAAKIFRVIDHKPSIDKESESGVELDTVTGLVELKNVDFSYPSRPEVRILSNFNLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGHDVKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGIYAKLIRMQEMAHESAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDVSHPNYRHEKLAFKEQASSFWRLAKMNSPEWLYALMGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIREIEKYCYLLIGLSSAALLFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFSSNLEIPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFAATIYENIAYGHDSVTEAEIVEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDAESERSVQEALDRACKEKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTNSQVIGMASGSSSSARPKDDEKEG. | 1361 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca8g05326 | 1360 | Gene3D | ABC transporter type 1, transmembrane domain | 1060 | 1337 | IPR036640 | GO:0005524|GO:0016020 | |
Seca8g05326 | 1360 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1085 | 1333 | IPR027417 | - | |
Seca8g05326 | 1360 | PANTHER | ABC TRANSPORTER B FAMILY | 84 | 822 | IPR039421 | - | |
Seca8g05326 | 1360 | Gene3D | - | 429 | 679 | IPR027417 | - | |
Seca8g05326 | 1360 | Gene3D | - | 1083 | 1334 | IPR027417 | - | |
Seca8g05326 | 1360 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 439 | 675 | IPR003439 | GO:0005524 | |
Seca8g05326 | 1360 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 771 | 1058 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca8g05326 | 1360 | SUPERFAMILY | ABC transporter transmembrane region | 758 | 1081 | IPR036640 | GO:0005524|GO:0016020 | |
Seca8g05326 | 1360 | ProSitePatterns | ABC transporters family signature. | 1233 | 1247 | IPR017871 | GO:0005524|GO:0016887 | |
Seca8g05326 | 1360 | MobiDBLite | consensus disorder prediction | 72 | 92 | - | - | |
Seca8g05326 | 1360 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 115 | 412 | - | - | |
Seca8g05326 | 1360 | FunFam | ABC transporter B family member 1 | 102 | 437 | - | - | |
Seca8g05326 | 1360 | Gene3D | ABC transporter type 1, transmembrane domain | 102 | 692 | IPR036640 | GO:0005524|GO:0016020 | |
Seca8g05326 | 1360 | SUPERFAMILY | ABC transporter transmembrane region | 103 | 423 | IPR036640 | GO:0005524|GO:0016020 | |
Seca8g05326 | 1360 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1094 | 1330 | IPR003439 | GO:0005524 | |
Seca8g05326 | 1360 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 760 | 1076 | - | - | |
Seca8g05326 | 1360 | FunFam | ABC transporter B family member 1 | 750 | 1059 | - | - | |
Seca8g05326 | 1360 | FunFam | ABC transporter B family member 1 | 429 | 679 | - | - | |
Seca8g05326 | 1360 | CDD | ABC_MTABC3_MDL1_MDL2 | 439 | 678 | - | - | |
Seca8g05326 | 1360 | Pfam | ABC transporter | 1113 | 1261 | IPR003439 | GO:0005524 | |
Seca8g05326 | 1360 | Gene3D | ABC transporter type 1, transmembrane domain | 750 | 1059 | IPR036640 | GO:0005524|GO:0016020 | |
Seca8g05326 | 1360 | MobiDBLite | consensus disorder prediction | 40 | 68 | - | - | |
Seca8g05326 | 1360 | SMART | AAA_5 | 466 | 652 | IPR003593 | GO:0016887 | |
Seca8g05326 | 1360 | SMART | AAA_5 | 1121 | 1313 | IPR003593 | GO:0016887 | |
Seca8g05326 | 1360 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 430 | 678 | IPR027417 | - | |
Seca8g05326 | 1360 | FunFam | ABC transporter B family member 19 | 1060 | 1082 | - | - | |
Seca8g05326 | 1360 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 116 | 404 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca8g05326 | 1360 | MobiDBLite | consensus disorder prediction | 25 | 94 | - | - | |
Seca8g05326 | 1360 | Pfam | ABC transporter | 457 | 606 | IPR003439 | GO:0005524 | |
Seca8g05326 | 1360 | Pfam | ABC transporter transmembrane region | 773 | 1041 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca8g05326 | 1360 | Pfam | ABC transporter transmembrane region | 116 | 388 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca8g05326 | 1360 | CDD | ABC_MTABC3_MDL1_MDL2 | 1094 | 1333 | - | - | |
Seca8g05326 | 1360 | ProSitePatterns | ABC transporters family signature. | 578 | 592 | IPR017871 | GO:0005524|GO:0016887 | |
Seca8g05326 | 1360 | FunFam | ABC transporter B family member 1 | 1084 | 1334 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca8g05326 | Seca-Chr8 | 144043696 | 144049855 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca8g05326 | 91 | 1357 | Calmodulin-binding Proteins | AT2G36910 | 88.722 | 0.0 | 2318 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca8g05326 | K05658 | - | gmx:100777382 | 2348.55 |