Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05326 ATGTCACAAGATTCTGAGGAGATAAAAACCATTGAGCAGTGGAGATGGTCTGAAATGCAAGGCCTTGAGCTAGTGTCTTCTGCTCCTTCTATTTCCAACCCACCAACACCAATATTGGAGGAGGAAAGAGGAGACTCCAAGGAAGAGGAAGAGCCTTCTACACAAGAGGGAGAGACAAGGGAAATGGAGGAGGCCTCAGTACCCAAGAAAAGTGGTGATGGTCTTTCTAATGGGAACACAAGTGGAAGTAGTAGTAGTATTAATGGAGAGAAGCCTGAGAGTGTTCCCTCTGTTGGGTTTGGTGAGCTTTTCAGATTTGCTGATGGTTTGGATTACATTCTCATGGCAATTGGAACTGTTGGAGCATTTGTACATGGTTGTTCCTTGCCACTGTTTCTTCGGTTCTTCGCTGATCTTGTAAATTCTTTTGGTTCCAATGCCAATAATTTGGATAAGATGACCCAGGAAGTGGTGAAGTATGCATTTTACTTCCTGGTAGTGGGTGCTGCTATATGGGCATCTTCATGGGCAGAGATTTCATGCTGGATGTGGACCGGAGAGCGCCAATCAACGAGGATGAGGATAAAGTATCTTGAAGCTGCCTTAGACCAGGACATTCAATTCTTTGACACAGAGGTTCGAACATCCGATGTTGTTTTTGCCATTAACACTGATGCTGTGATGGTACAAGATGCCATAAGCGAAAAGTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGATTTGCTGTGGGTTTCACTGCTGTTTGGCAATTAGCACTGGTTACTCTCGCTGTAGTCCCTATGATAGCAGTAATCGGAGCCATTCACACCACCACATTGGCCAAGCTATCGAGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGCAGAACAGACTATTGTTCAAATTCGAGTGGTGTTGGCATTTGTTGGGGAGAATAGAGCACTACAGGCTTATTCCTCTGCTTTGAGGATTGCTCAGAAGATTGGCTACAGGAGTGGTTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCTCTTTTGCTATGGTATGGAGGCTATCTAGTTAGGCACCACTACACCAATGGAGGACTTGCCATTGCCACCATGTTTTCTGTTATGATTGGTGGATTGGCTTTAGGCCAGTCTGCACCTAGCATGACTGCGTTTACAAAGGCCAGAGTTGCAGCTGCAAAAATCTTCCGTGTGATTGATCACAAGCCGAGTATAGACAAAGAGAGTGAATCAGGTGTGGAGTTAGACACTGTTACAGGACTAGTAGAGCTGAAAAATGTGGACTTTTCATACCCATCAAGGCCAGAGGTTCGGATCCTTAGCAATTTCAACTTGAATGTGCCTGCTGGTAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCCGGCAAGAGCACAGTTGTCTCTCTTATTGAGAGATTCTATGATCCTTCTTCAGGACAAGTTTTGCTTGATGGGCATGATGTTAAGACATTGAAGCTTAGGTGGTTGAGACAGCAAATAGGACTAGTGAGCCAAGAGCCTGCTTTGTTTGCTACCACAATTAGAGAAAACATACTATTGGGTAGGCCTGATGCTGACCAGGTTGAAATTGAAGAAGCTGCAAGAGTAGCTAATGCTCATTCTTTCATCATCAAACTTCCTGATGGCTATGATACTCAGGTAGGAGAGAGAGGGCTGCAACTTTCAGGTGGACAAAAGCAGAGAATAGCAATTGCAAGGGCAATGCTGAAAAACCCTGCAATACTTCTCCTAGATGAGGCAACAAGTGCATTGGATTCTGAGTCAGAAAAGTTGGTTCAAGAAGCACTTGATCGGTTCATGATTGGTAGAACAACTCTTGTAATTGCACATCGCCTCTCCACTATCCGCAAAGCTGACCTTGTAGCTGTACTTCAACAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTTGCTAAAGGTGAAAATGGAATCTATGCCAAGCTTATCCGAATGCAGGAAATGGCTCATGAAAGTGCTATGAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCTAGTGCTAGAAACTCTGTAAGCTCACCCATAATTGCTAGGAATTCTTCTTATGGCCGGTCACCATACTCAAGGAGGCTTTCTGACTTCTCTACATCTGATTTTAGCCTGTCCCTTGATGTATCACATCCAAATTACAGGCATGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTCTGGAGACTTGCAAAGATGAACTCTCCTGAATGGCTTTATGCTTTGATGGGTTCTATAGGTTCTGTTGTTTGTGGATCTCTCAGTGCATTCTTTGCTTATGTTCTCAGTGCTGTCCTCAGTGTCTATTACAATCCAAACCACAGACACATGATTAGAGAAATTGAAAAATACTGCTACTTGTTAATTGGGCTTTCATCAGCTGCACTTCTCTTCAATACATTGCAGCACTCCTTCTGGGATATTGTTGGTGAAAATCTCACAAAACGGGTTAGGGAGAAAATGTTAACTGCAGTGCTTAAAAATGAAATGGCATGGTTTGATCAAGAGGAAAATGAGAGTGCCCGGATTGCAGCCAGGCTAGCTCTTGATGCTAACAATGTCAGATCAGCCATTGGAGATAGGATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCATGTACTGCAGGGTTTGTATTGCAGTGGCGCCTTGCCCTTGTCCTTGTAGCTGTCTTCCCTGTTGTGGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCCAAGGCCACACAACTAGCTGGGGAGGCTATAGCCAATGTAAGGACTGTTGCTGCCTTTAACTCAGAAAAGAAAATTGTTGGCCTTTTCTCCTCCAACCTTGAAATTCCACTGCGGCGCTGCTTTTGGAAGGGACAGATTTCTGGAAGTGGATATGGGATAGCTCAGTTTGCACTCTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTTGTGAAGCATGGTATATCTGATTTCTCTAAGACAATAAGAGTTTTTATGGTCCTCATGGTTTCTGCTAATGGTGCTGCTGAAACTTTAACCTTGGCTCCTGACTTCATCAAAGGAGGTAGAGCCATGAGGTCAGTTTTTGAACTCCTTGACCGTAGAACTGAAATTGAACCAGATGATCCAGATGCTACACCTGTCCCTGATCGTCTTCGTGGTGAAGTAGAACTTAAACATGTTGATTTCTCTTATCCCACTAGGCCAGATATGCCAGTTTTTCGTGACCTTAGTCTTCGTGCAAGAGCAGGCAAAACTCTTGCTCTTGTAGGGCCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTCATACAAAGATTCTATGATCCAACATCTGGCCGAGTCATGATTGATGGAAAGGACATAAGGAAATACAATCTCAAGTCCCTTAGAAGGCACATTGCTGTGGTACCTCAAGAGCCATGCTTGTTTGCTGCTACAATTTATGAAAACATTGCTTATGGGCATGACTCAGTTACTGAAGCTGAGATTGTTGAGGCTGCAACTCTTGCAAATGCTCACAAGTTCATATCTTCTCTGCCAGATGGATACAAGACATTTGTTGGTGAGAGAGGAGTTCAACTATCTGGAGGACAGAAGCAGAGAATAGCAATTGCTCGTGCTTTTGTGAGGAAAGCAGAACTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAAGAGGCCCTAGACCGTGCTTGTAAAGAAAAAACTACTATTATTGTTGCACACAGGCTATCAACTATCAGGAATGCCAACCTCATTGCAGTGATTGATGATGGCAAAGTAGCAGAACAAGGCTCCCATTCACAGTTGTTGAAAAATCACCCTGATGGGATCTATGCTCGCATGATTCAACTTCAAAGGTTCACAAATAGCCAAGTCATTGGGATGGCCTCAGGTTCAAGTTCTTCAGCAAGACCAAAAGATGATGAAAAAGAAGGCTAA 4083 0.4386 MSQDSEEIKTIEQWRWSEMQGLELVSSAPSISNPPTPILEEERGDSKEEEEPSTQEGETREMEEASVPKKSGDGLSNGNTSGSSSSINGEKPESVPSVGFGELFRFADGLDYILMAIGTVGAFVHGCSLPLFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIKYLEAALDQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFAVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIAEQTIVQIRVVLAFVGENRALQAYSSALRIAQKIGYRSGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFSVMIGGLALGQSAPSMTAFTKARVAAAKIFRVIDHKPSIDKESESGVELDTVTGLVELKNVDFSYPSRPEVRILSNFNLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGHDVKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGENGIYAKLIRMQEMAHESAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDVSHPNYRHEKLAFKEQASSFWRLAKMNSPEWLYALMGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHRHMIREIEKYCYLLIGLSSAALLFNTLQHSFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFSSNLEIPLRRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDPDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHIAVVPQEPCLFAATIYENIAYGHDSVTEAEIVEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIAIARAFVRKAELMLLDEATSALDAESERSVQEALDRACKEKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTNSQVIGMASGSSSSARPKDDEKEG. 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05326 1360 Gene3D ABC transporter type 1, transmembrane domain 1060 1337 IPR036640 GO:0005524|GO:0016020
Seca8g05326 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1085 1333 IPR027417 -
Seca8g05326 1360 PANTHER ABC TRANSPORTER B FAMILY 84 822 IPR039421 -
Seca8g05326 1360 Gene3D - 429 679 IPR027417 -
Seca8g05326 1360 Gene3D - 1083 1334 IPR027417 -
Seca8g05326 1360 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 439 675 IPR003439 GO:0005524
Seca8g05326 1360 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 771 1058 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05326 1360 SUPERFAMILY ABC transporter transmembrane region 758 1081 IPR036640 GO:0005524|GO:0016020
Seca8g05326 1360 ProSitePatterns ABC transporters family signature. 1233 1247 IPR017871 GO:0005524|GO:0016887
Seca8g05326 1360 MobiDBLite consensus disorder prediction 72 92 - -
Seca8g05326 1360 CDD ABC_6TM_Pgp_ABCB1_D1_like 115 412 - -
Seca8g05326 1360 FunFam ABC transporter B family member 1 102 437 - -
Seca8g05326 1360 Gene3D ABC transporter type 1, transmembrane domain 102 692 IPR036640 GO:0005524|GO:0016020
Seca8g05326 1360 SUPERFAMILY ABC transporter transmembrane region 103 423 IPR036640 GO:0005524|GO:0016020
Seca8g05326 1360 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1094 1330 IPR003439 GO:0005524
Seca8g05326 1360 CDD ABC_6TM_Pgp_ABCB1_D2_like 760 1076 - -
Seca8g05326 1360 FunFam ABC transporter B family member 1 750 1059 - -
Seca8g05326 1360 FunFam ABC transporter B family member 1 429 679 - -
Seca8g05326 1360 CDD ABC_MTABC3_MDL1_MDL2 439 678 - -
Seca8g05326 1360 Pfam ABC transporter 1113 1261 IPR003439 GO:0005524
Seca8g05326 1360 Gene3D ABC transporter type 1, transmembrane domain 750 1059 IPR036640 GO:0005524|GO:0016020
Seca8g05326 1360 MobiDBLite consensus disorder prediction 40 68 - -
Seca8g05326 1360 SMART AAA_5 466 652 IPR003593 GO:0016887
Seca8g05326 1360 SMART AAA_5 1121 1313 IPR003593 GO:0016887
Seca8g05326 1360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 678 IPR027417 -
Seca8g05326 1360 FunFam ABC transporter B family member 19 1060 1082 - -
Seca8g05326 1360 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 116 404 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05326 1360 MobiDBLite consensus disorder prediction 25 94 - -
Seca8g05326 1360 Pfam ABC transporter 457 606 IPR003439 GO:0005524
Seca8g05326 1360 Pfam ABC transporter transmembrane region 773 1041 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05326 1360 Pfam ABC transporter transmembrane region 116 388 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g05326 1360 CDD ABC_MTABC3_MDL1_MDL2 1094 1333 - -
Seca8g05326 1360 ProSitePatterns ABC transporters family signature. 578 592 IPR017871 GO:0005524|GO:0016887
Seca8g05326 1360 FunFam ABC transporter B family member 1 1084 1334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05326 Seca-Chr8 144043696 144049855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05326 91 1357 Calmodulin-binding Proteins AT2G36910 88.722 0.0 2318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05326 K05658 - gmx:100777382 2348.55