Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05325 ATGACGTATTCCTCACCCCGGCCACCCATCCGTCTTTCAACCGACCCCAACCTCTCCTTAACATCCTTCCTCTTCCAAAGCACCACCTCCGTCGCCAACACCCTCGCCCTCGCCGACGCCCATTCCGGCGACTACCTCACCTTCCGCCAGCTCAAAACCCATGTCTCCGCCCTCTCTCGCTCCTTGCTTCGCCTCGGAATCCGACGAGGCGATGTCGTTTTACTATTCGCACCCAACTCCATACGCTTCCTCGTCTGCTTCCTTGCCGTCGTTGCCATCGGCGCCATCGCCACCACCTGCAGCCCCTTATACACAGTCTCCGAACTCTCCACACAAGTCCACGACTCCAACCCCAAGCTTGTCATCACTGTTTCAGAACTCTTCCACAAGATCGAAGCCTTAAACTTACCCTCCATAATGCTGGATGATCCATCGAACCACGTAAATTTATCGAGTAAGCCTGGTTCTAGGATCCGGTACTACGTGGATTTGATCGGAGAGTCGGAAGGGAGCTCCGACGAGGTTCCGGTAGACGGCGCCGTTTCACAGTCCGACGTGGCGGCGCTTCTGTACTCTTCCGGCACCACGGGAAGGAGCAAGGGAGTGATGCTGACTCACCGGAATTTCATCGCGGCGGCAGTGGCGACGACGGTGGATCAGGACCGTTACGGCGAGGGAAAGAACGTGTTCTTGTGCTTGGTGCCGATGCACCACGTGTTGGGGCTGTTAGTGATAACGTACGCGCAGCTGCGGAGAGGGAACGCGGTGGTGTCGATGGTGAGGTTTGATCTGGAGAAGGTTCTCGCGGCGGTGGAGAAGTTCCGGGTAACGAATTTATTCGTTGCTCCACCGGTGATGGTGGAGCTGGCGAAACGGCGTGGTGTGGTGAAGGCGTACGACTTGTCGTCCCTGAAACAGCTCGCAGGTGGTGCTGCACCTTTGGGGAAAGACGTGATGCAGGAGTGTGCTAAGATTCTACCCCACGCTGAAATCATTCAGGGGTATGGCATGACGGAAGCATGTGGACCTATTTCTATAGAAGATGCAAAGGAAGGATGCCGCTTTTCAGGTTCAACTGGAAAGCTAATTCCATGTTTAGAATCCCGAATAGTTAGTTTAGAAACATCGAGGCCCCTTCCACCAAATCAATTAGGGGAAATTTGGTTACGAGGACCTACTATGATGCAAGGATATTTTAACAATCCAGAGGCGACAAAACAGACCATGGATGATCAAGGTTGGATGCGTACAGGAGATCTTGGATATTTTGATGAAGAGGGACAGCTATTTGTTGTCGATAGAATAAAAGAGCTCATCAAGTGTAGTGGATATCAGGTTGCGCCAGCAGAACTTGAAGACTTGCTGGTTTCTCACCCTGATATTTATGATGCTGGGGTGATCCCATCCCCCGATGCTAAAGCTGGTCAGGTTCCAGTTGCTTTTGTCGTTCGCTCACCCAATAGCTTGATAACAGCAGAAGACATTCAGAAGTTTGTAGCAAAACAGGTTGCACCATACAAAAGGTTGCGACGGGTGACTTTTATAGAGAAGATTCCAAAGTCAGCCACGGGAAAAATCTTAAGAAAGGATCTCATAAGTTTTGATCGACAAAAGACATTGAAGTTATAG 1629 0.5132 MTYSSPRPPIRLSTDPNLSLTSFLFQSTTSVANTLALADAHSGDYLTFRQLKTHVSALSRSLLRLGIRRGDVVLLFAPNSIRFLVCFLAVVAIGAIATTCSPLYTVSELSTQVHDSNPKLVITVSELFHKIEALNLPSIMLDDPSNHVNLSSKPGSRIRYYVDLIGESEGSSDEVPVDGAVSQSDVAALLYSSGTTGRSKGVMLTHRNFIAAAVATTVDQDRYGEGKNVFLCLVPMHHVLGLLVITYAQLRRGNAVVSMVRFDLEKVLAAVEKFRVTNLFVAPPVMVELAKRRGVVKAYDLSSLKQLAGGAAPLGKDVMQECAKILPHAEIIQGYGMTEACGPISIEDAKEGCRFSGSTGKLIPCLESRIVSLETSRPLPPNQLGEIWLRGPTMMQGYFNNPEATKQTMDDQGWMRTGDLGYFDEEGQLFVVDRIKELIKCSGYQVAPAELEDLLVSHPDIYDAGVIPSPDAKAGQVPVAFVVRSPNSLITAEDIQKFVAKQVAPYKRLRRVTFIEKIPKSATGKILRKDLISFDRQKTLKL. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05325 542 Gene3D - 3 436 IPR042099 -
Seca8g05325 542 FunFam 4-coumarate--CoA ligase 2 437 538 - -
Seca8g05325 542 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Seca8g05325 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 4 436 - -
Seca8g05325 542 Pfam AMP-binding enzyme 33 441 IPR000873 -
Seca8g05325 542 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
Seca8g05325 542 CDD 4CL 12 531 - -
Seca8g05325 542 Gene3D - 437 538 IPR045851 -
Seca8g05325 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 532 - -
Seca8g05325 542 SUPERFAMILY Acetyl-CoA synthetase-like 17 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05325 Seca-Chr8 143979450 143988514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05325 3 538 Monolignol Biosynthesis Gene Families AT4G05160 59.328 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05325 K01904 - psat:127097095 800.816