Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05323 ATGGGCAGGGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGACCATGGAGTCCTGAAGAAGATGAAAAGCTAAAGGAGTACATAGAGAAACATGGGACTGGAGGGAACTGGATAGCCCTCCCACAGAAAGCTGGTTTGAAAAGATGTGGGAAAAGTTGTAGACTCAGATGGCTTAATTATCTCAGACCCAACCTTAAGCATGGTGAGTTCTCTGAAGATGAAGATAGAGTAATCTGCAGTCTCTATGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCTGGTAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAAAAAATGATGGGAATGAATCCTTTGAAGAAACCTCACCAAGTTACCCTTTTATCAGTCCTTCAAAATTCAACACCAACTTCATCCTCCTCATCAACTTCACCATTATCATTCAGGGACAACCACAACTCTTACTACCACCCTCATATGTCTTTCACAGGCTCTGAGTCTATTTCATACTCCTCTAGTCTTTTGAGTGGCAATTCTTCTACTCCTGCTAATTCCAATTTTCAAGCACAAGAAAGTTTCTTGGTCCCTATTCAGAATTACCAAGTTAATAGTGGTTTTATGTTTGGGGGTGAAGCTAGTTGTAGCTCTTCTGATGGGAGCTGCAATAACCAGATGAGTCATCAGGTAAAAGAAGCAGAACTTGGATATGGTGGAGATGGAACTTTTGCAGACCAGATAGGTGGACTTAATTGCCTCTACAGTGGGATGGAAGATACCCAAAAGTTGATGCTCTCCAATGCTGGTAGGGTTAGTGGGTGGACAGTGGAACAAAGTAGATTATGGGGAGAAAATCCATTAAATTATGGTCTAGAAGAAATTAAACAGCTTATAAGCACTAATAGTTGTAACAACTTTTTGTTTGATGACAAGACAGAGGAAAGGATCATGTACTACTGA 969 0.4097 MGRAPCCDKANVKKGPWSPEEDEKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNLKHGEFSEDEDRVICSLYASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMGMNPLKKPHQVTLLSVLQNSTPTSSSSSTSPLSFRDNHNSYYHPHMSFTGSESISYSSSLLSGNSSTPANSNFQAQESFLVPIQNYQVNSGFMFGGEASCSSSDGSCNNQMSHQVKEAELGYGGDGTFADQIGGLNCLYSGMEDTQKLMLSNAGRVSGWTVEQSRLWGENPLNYGLEEIKQLISTNSCNNFLFDDKTEERIMYY. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05323 322 SMART sant 13 64 IPR001005 -
Seca8g05323 322 SMART sant 67 115 IPR001005 -
Seca8g05323 322 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca8g05323 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Seca8g05323 322 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Seca8g05323 322 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca8g05323 322 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Seca8g05323 322 Gene3D - 7 68 - -
Seca8g05323 322 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca8g05323 322 CDD SANT 16 62 IPR001005 -
Seca8g05323 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Seca8g05323 322 FunFam Transcription factor RAX3 7 68 - -
Seca8g05323 322 FunFam Transcription factor MYB36 70 139 - -
Seca8g05323 322 PANTHER OS09G0431300 PROTEIN 1 235 - -
Seca8g05323 322 Gene3D - 69 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05323 Seca-Chr8 143893721 143896130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05323 1 119 MYB Transcription Factor Family AT5G57620 88.235 2.60e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g05323 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05323 K09422 - gmx:100820139 439.499