Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05303 ATGCAAGGAGAACATTTGCGTAAAGGGACTTGGCTGCAAGAGGAAGATGAGCAATTGACCAGCTTTGTGACTCGTCTTGGGGAACGAAGGTGGGATTCCCTTGCCAAAGTAGCTGGACTTAGGAGAAGTGGTAAAAGCTGCAGGTTAAGGTGGATGAACTACCTTCGTCCAAATCTCAAGCATGGACCTTTTAGTGTTGAAGAAGAGCAACTTATTGTTCAGCTTCAGCAGCAATGGGGTAACAAGTGGGCGAAGATTGCTCGTAGGCTTCCAGGAAGAACTGACAATGAAATCAAGAACTACTGGAGAACTCATTTAAGAAAAAGAGTACAAGCTCAACAAGAAGGTGTACAAGGTTTCAACCAGAAAAGCATTGATATGGTTTCCAAGGATTGCAACCATGTAAACGTTTACTGTCAAGATAATGAGTGGGAGACTAAGGATAGCTCCTCCATTGACACTTTTCCCTTATCAGATTGGGAAATGAGAAGCTCACCATATGAAGCTAGGATATTTGATTGGATAGCAGAATTGCAAAATGGATATGATGAGAAAGAACTAGAACAAGATTGTAATAGCACAGGAACGTACGAATATAATCCTCATGAGTCTGCAGAGAGCTATGATACATGGGATTATTCAGGTTTCCTGTGGGACATGAATTGA 666 0.4189 MQGEHLRKGTWLQEEDEQLTSFVTRLGERRWDSLAKVAGLRRSGKSCRLRWMNYLRPNLKHGPFSVEEEQLIVQLQQQWGNKWAKIARRLPGRTDNEIKNYWRTHLRKRVQAQQEGVQGFNQKSIDMVSKDCNHVNVYCQDNEWETKDSSSIDTFPLSDWEMRSSPYEARIFDWIAELQNGYDEKELEQDCNSTGTYEYNPHESAESYDTWDYSGFLWDMN. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05303 221 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Seca8g05303 221 SMART sant 60 108 IPR001005 -
Seca8g05303 221 SMART sant 7 57 IPR001005 -
Seca8g05303 221 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Seca8g05303 221 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Seca8g05303 221 Gene3D - 8 60 - -
Seca8g05303 221 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Seca8g05303 221 FunFam Myb transcription factor 8 60 - -
Seca8g05303 221 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Seca8g05303 221 CDD SANT 63 106 IPR001005 -
Seca8g05303 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Seca8g05303 221 CDD SANT 10 55 IPR001005 -
Seca8g05303 221 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Seca8g05303 221 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 153 - -
Seca8g05303 221 Gene3D - 62 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05303 Seca-Chr8 143630260 143631452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05303 4 114 MYB Transcription Factor Family AT5G59780 60.360 4.87e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g05303 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05303 K09422 - gmx:100783472 365.925