Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05302 ATGAAATCTCCTTCTTCATCAACAATGCTCCAAACAACCTGCATTTTACTAATCTCTGTTCTGGCTTCGTTTTTACCGCATGGCAGAGCAATGCTGAACCTCACTCTTCCCGGCCAACATCCAGACCCCGAAGCTGTTGCCCGAGAAGTTCACAGGAAAGTTAATGCTTCACTTACAAGGAGGGAAATGCTTGCAGTATCAGAGAAAGAGGTGTCATCGTGCCTAACTGGAAACCCCATTGATGATTGTTGGAAATGCGACCCAGATTGGGCTAATAACAGGCAAAGGCTAGCTGACTGTGCAATTGGGTTCGGGCAGAACGCAAAGGGAGGCAAAGGTGGGCAATTTTACATAGTCACAGACTCCTCAGACGATGATGCTGTGAACCCAAAACCTGGGACACTTAGATATGCTGTGATACAGAATGAGCCACTGTGGATTGTGTTCCCCAGTAACATGATGATTAAGCTGTCTCAGGAACTCATTTTTAACAGCTACAAGACCATTGATGGGCGTGGCGCTGATGTGCACATTGTGGGTGGAGGCTGTATCACACTCCAGTATATAAGCAATGTCATCATACACAACATTCACATCCACCATTGTCATCCCTCCGGTAACGCTAATGTGCGGTCGAGTCCAGAGCACTACGGTTTCCGAACAGAATCAGACGGCGACGGAATCTCGATATTCGGATCAAGGGACATATGGATCGACCACTGCACACTATCACGTTGCAAGGACGGTTTGATAGACGCAGTGATGGGTTCAACGGCGATAACGATTTCCAACAACCACTTCTCCCACCACAACGAGGTGATGCTTTTAGGGCATAGTGACCACTACACGCCAGACTCAGCCATGCAGGTGACAATCGCTTTCAACCACTTCGGCGAGAATCTCGTGCAGAGAATGCCGCGGTGCAGGCTAGGGTACATCCACGTGGTGAACAACGACTTCACGATGTGGGAGATGTACGCCATTGGGGGAAGTGGGGGGCCCACAATTAACAGCCAGGGGAACCGTTACACTGCACCAGAGGATCGTTATGCGAAGGAGGTGACAAAGAGGTTGGATACTGGAGAAGGAGAGTGGAGTTCGTGGAATTGGAGGTCGGAAGGGGATGTGATGGTGAATGGAGCTTTCTTTGTGGCTTCGGGTGGAGATAGTGAGGGAAAGTATGAGAAGGCTTACAGTGTTGACCCTAAATCTGCTGATCGGATTTCATTCCTCACCATGGCCGCCGGTGTTCTCGGTGTTGCAAGGGACAATAATCTGGGTATGTGGACTAGAGGACCCAATGATGGTGGTACTTATTTTTCAGATTTCGGCCCAGATTACACAGACGATATGTCCCAGACTACAATGCTGATGCCACCTTCACTTACTTTGACTCTTGTCTCTGTTTTTCTTGCATTCTTGTGCTTGTTATTTCATACAAGTACAACCTTAGCAATAGTTCTATAA 1467 0.4819 MKSPSSSTMLQTTCILLISVLASFLPHGRAMLNLTLPGQHPDPEAVAREVHRKVNASLTRREMLAVSEKEVSSCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGFRTESDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYTPDSAMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDFTMWEMYAIGGSGGPTINSQGNRYTAPEDRYAKEVTKRLDTGEGEWSSWNWRSEGDVMVNGAFFVASGGDSEGKYEKAYSVDPKSADRISFLTMAAGVLGVARDNNLGMWTRGPNDGGTYFSDFGPDYTDDMSQTTMLMPPSLTLTLVSVFLAFLCLLFHTSTTLAIVL. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05302 488 FunFam Pectate lyase 77 419 - -
Seca8g05302 488 SMART amb_all 152 349 IPR002022 -
Seca8g05302 488 Pfam Pectate lyase 161 329 IPR002022 -
Seca8g05302 488 Gene3D - 77 419 IPR012334 -
Seca8g05302 488 PANTHER PECTATE LYASE 18-RELATED 38 421 IPR045032 GO:0030570
Seca8g05302 488 SUPERFAMILY Pectin lyase-like 78 406 IPR011050 -
Seca8g05302 488 PRINTS Pollen allergen Amb family signature 397 420 IPR018082 -
Seca8g05302 488 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Seca8g05302 488 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Seca8g05302 488 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Seca8g05302 488 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Seca8g05302 488 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Seca8g05302 488 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Seca8g05302 488 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05302 Seca-Chr8 143623839 143628984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05302 9 488 Polysaccharide Lyase AT3G53190 70.782 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05302 K01728 - gmx:100815062 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05302 8 143623839 143628984 Seca8g05302 8 143623839 143628984 ECH
Seca8g05302 8 143623839 143628984 Seca2g04696 2 133112381 133116731 PCT