Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05297 ATGCAGAACAGCGACACCCCTCTCAGTGGGCCTAGGCCCGTTTTCTTTCAGAATCCTGAGAATGAGAGCAACAATCAGAACATAAAGGATACCCTAAAGAACATCGCCAAGGCCGCACTGGCCGAGTTCGTATCCACATTCATCTTCGTCTTCGCCGGCTCCGGCTCCCTCATCGCCATCAACAGGTCCACCGGCGACACCGCCCCCACCCCCGCTGGCCTCATCGCCTCCGCCCTCGCTCACGCTTTCGCCCTCTCCGCCGCCGTCTGCGTCCCCGGCGTTTTCTTCAACACACCGTACACCTTATGCGGCCACATCAACCCCGCCGTCACCTTGGGCGCCTTCATCGGCGGCAACATCCACGTCATTCTCCTCATCATCTACTGGATCGCCCAACTCCTCGGCTCCATCGTCGCCTGCTTGCTCCTCATGCTCGTCACCGGCCGACAGAGTGTGCCAACTTATGGACTTTCCGAAGGAGTGGGAACTGAGAACGCGGTGGCATTAGAGGCGGTGATGACGTTCGGGTTGGTGTTTACGGTGTATGCCACTATGTTTGACCCAAACGCCAAGTTCGAAACGGAGTATGTTCGTCGTCATCCCGTTGACCCCAAGGAGAAGACCAAGACGAAGCAGAAGAAGAATGGTTTGGACAATATTGCACCCATTGCCATCGGGCTGATCGTTGGAGCGAATATTTTGGCAGGCGGGGCTTTTGATGGGGCACCCATGAACCCGGCTTTGGCGTTTGGACCTGCTCTCGTGAACTCGAGATGGGGCAACCATTGGGTCTATTGGGTTGGTCCTCTCATTGGTGGTGGGCTTGCTGGATTTACTTATGAGCTGGCCTTTATTAATAATTAG 864 0.559 MQNSDTPLSGPRPVFFQNPENESNNQNIKDTLKNIAKAALAEFVSTFIFVFAGSGSLIAINRSTGDTAPTPAGLIASALAHAFALSAAVCVPGVFFNTPYTLCGHINPAVTLGAFIGGNIHVILLIIYWIAQLLGSIVACLLLMLVTGRQSVPTYGLSEGVGTENAVALEAVMTFGLVFTVYATMFDPNAKFETEYVRRHPVDPKEKTKTKQKKNGLDNIAPIAIGLIVGANILAGGAFDGAPMNPALAFGPALVNSRWGNHWVYWVGPLIGGGLAGFTYELAFINN. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05297 287 Pfam Major intrinsic protein 210 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05297 287 Pfam Major intrinsic protein 35 190 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05297 287 CDD MIP 37 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05297 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Seca8g05297 287 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05297 287 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05297 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05297 287 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05297 287 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05297 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca8g05297 287 PANTHER AQUAPORIN-8 32 286 IPR034294 -
Seca8g05297 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Seca8g05297 287 SUPERFAMILY Aquaporin-like 32 285 IPR023271 -
Seca8g05297 287 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05297 Seca-Chr8 143571755 143573617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05297 29 287 Major Intrinsic Protein MIP AT2G36830 56.371 4.46e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05297 K09873 - zju:107431962 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05297 8 143571755 143573617 Seca8g05297 8 143571755 143573617 ECH
Seca8g05297 8 143571755 143573617 Seca2g04701 2 133163096 133164731 PCT