Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05294 AAAGATTCTTCTGAGCATTGGTTTCTGGTGGTCATCTCATTGGAAGAACAATTAATTTATTTCCTGGACTCTTACCTCAAATGGGAGGATTTGAGGAGGAATACAATTAGGAACCTGTGTGAGGCATTGCCAAATATCATGACTTTTGAGGCATATCCAGAAGACTTTCTTCATTCTGGCGTGCAACTTGACATGTGGGAGTTATTTGTTTCCAGAAATTTAACTAACGGAGGGACTATGGAAAATTCTGCTATATGGTTATTGGACTGGATGGAGATGGAAAATGCATTTCACACCAATCTAATACCGTTGATAAATGAGCGACATATTCGCATGCGCTGTGCATTGAATCTTGTCTGTGGAGAGTACAATAAATACAACCAAATAGTTGATGATCAAGCAGAAACATATTGGACGACCCATATGAAGGGCCTGGCTTTATCTGTGATATGCTCTGGGTATGTTCACGGTGTGTACAAGAAAACTAAAAGGAAAACACATCTTAGTGAGAACACAACAACGATGAACAGTTCAACAAATGCAGGCAGCAGTGATGAAGACACCGTGATTCGGGTTCCTTTCATGGCTACTTGGCTACCATATCGGTCATCAATTATCATTGCCAAGAAATTGATTAACACGATCCTCTCTGAGTTACCCGAAACTGTGATTTTAAAGGACCCCGTTGGAAATGAATTTAATGTTGGTATTGAGATCAGAGGAAACAAACACTGCTTCACGAAAGGATTACCACAGATGAGGGCATTTTACCATGTTCATTATCCAGTACACATGTGGTACAAGTATCTTGGAAATGGTACATTCAACTTTCAACTTTGGCCAACCGATGGACATGAGCAGATTCAATATCCAAATCAAGCTTCAAATCAAGTGGGTAATCATGTTAGAAACCACTCAAGGTCAAGGGACGACATTGATAGCGAAGATGTTCAACGAGAAGATGTTCAGGTGGAATCAGATGAAATAATTGGAGTTCAAGGTGAAGATCTATGGATGACAATAGTCACTCAAGCTCAATTAGAAGGCAGGCGTGGAGTGGTTATACCAGCAAAAGTTGTCACCAATTACTTCCACAACAGGCCTCACGAATTCCAGGTTAGATTACCAAATGGCGATGTGAAAACGTGGAAACTAATTTGGAGTCAGCGAATACCAATTGAATGCAAAATTGGACATGGATGGAGTGAATTTTGTACCACAAATGCGCTGCGCAAAGGTGACCAGATCAGGTTTTGGAAATTGGATGGTGAAGGCTCCATCAGAATTGTTCTTACAAGATCATTATCTTGA 1311 0.4035 KDSSEHWFLVVISLEEQLIYFLDSYLKWEDLRRNTIRNLCEALPNIMTFEAYPEDFLHSGVQLDMWELFVSRNLTNGGTMENSAIWLLDWMEMENAFHTNLIPLINERHIRMRCALNLVCGEYNKYNQIVDDQAETYWTTHMKGLALSVICSGYVHGVYKKTKRKTHLSENTTTMNSSTNAGSSDEDTVIRVPFMATWLPYRSSIIIAKKLINTILSELPETVILKDPVGNEFNVGIEIRGNKHCFTKGLPQMRAFYHVHYPVHMWYKYLGNGTFNFQLWPTDGHEQIQYPNQASNQVGNHVRNHSRSRDDIDSEDVQREDVQVESDEIIGVQGEDLWMTIVTQAQLEGRRGVVIPAKVVTNYFHNRPHEFQVRLPNGDVKTWKLIWSQRIPIECKIGHGWSEFCTTNALRKGDQIRFWKLDGEGSIRIVLTRSLS. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05294 436 CDD B3_DNA 339 433 IPR003340 GO:0003677
Seca8g05294 436 SUPERFAMILY DNA-binding pseudobarrel domain 339 423 IPR015300 -
Seca8g05294 436 MobiDBLite consensus disorder prediction 294 318 - -
Seca8g05294 436 ProSiteProfiles B3 DNA-binding domain profile. 338 435 IPR003340 GO:0003677
Seca8g05294 436 Pfam B3 DNA binding domain 339 423 IPR003340 GO:0003677
Seca8g05294 436 Gene3D - 324 433 IPR015300 -
Seca8g05294 436 SUPERFAMILY DNA-binding pseudobarrel domain 198 280 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05294 Seca-Chr8 143533753 143536600 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca8g05294 B3 3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05294 - K04282 lja:Lj3g3v2027400.1 110.153