Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05289 ATGCAGCAGGTCTTAGAAGAACTTGTGGTTTCCAAGGATCACACGCAGATCATCAAAGGCAAGCGCACCAAGCGTCAAAGGCTACCTTCCATGCCTTCAACTGAAGAAGAAGAAGAAAGACTTGATCTTGCAACAACCTCACCTACCACAATTGAATTGAAGGACAAAACTGAAGAAGAGGAAGAGTACATGGCCAATTGTCTCATTCTCTTGGCTCAAGGCCATCATCATGCGCCACCAGATCACAAGTCATCAGGCCTATGCTTTTATGAGTGCAAGACTTGCAACCGATGCTTCCCTTCATTCCAAGCGCTTGGTGGACATAGAGCGAGTCACAAGAAACCCAAGGCTAACGGTAATTGTACGGAAGAAAAGCAAGCAGTTACTACTGCTTTTGTGAATCATGATCATTATGGCCCCACCACAAATACTATTCCCTCGTTGCAACTAACAAACAGGGGTTCGTATACTGCAATAACAAAATCTAAAGTTCACGAGTGTTCTATTTGTGGTGCTGAGTTCTCATCTGGGCAAGCCTTGGGAGGCCATATGAGGCGGCACAGAGCTCATGTGACTACGTCCGCAACGACGTCGTCTATGAGCGGTGGAAACTTGGAAGGCAAGAAACCGAGAAACGTTTTGAAGTTGGACTTGAATTTGCCAGCACCAGAGGATGATCACAAGTTTTCGTTTCAGCCTGGGACAAGAGAAAACGTTATTGTCTTCTCTACATCTTCTTTGGTGGATTGTCATTACTAA 759 0.4532 MQQVLEELVVSKDHTQIIKGKRTKRQRLPSMPSTEEEEERLDLATTSPTTIELKDKTEEEEEYMANCLILLAQGHHHAPPDHKSSGLCFYECKTCNRCFPSFQALGGHRASHKKPKANGNCTEEKQAVTTAFVNHDHYGPTTNTIPSLQLTNRGSYTAITKSKVHECSICGAEFSSGQALGGHMRRHRAHVTTSATTSSMSGGNLEGKKPRNVLKLDLNLPAPEDDHKFSFQPGTRENVIVFSTSSLVDCHY. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05289 252 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Seca8g05289 252 SMART c2h2final6 165 187 IPR013087 -
Seca8g05289 252 SMART c2h2final6 90 112 IPR013087 -
Seca8g05289 252 Pfam C2H2-type zinc finger 164 189 - -
Seca8g05289 252 Pfam C2H2-type zinc finger 90 115 - -
Seca8g05289 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 192 IPR013087 -
Seca8g05289 252 PANTHER ZINC FINGER PROTEIN ZAT5 46 228 - -
Seca8g05289 252 MobiDBLite consensus disorder prediction 20 43 - -
Seca8g05289 252 MobiDBLite consensus disorder prediction 28 43 - -
Seca8g05289 252 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Seca8g05289 252 Gene3D Classic Zinc Finger 88 187 - -
Seca8g05289 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 117 IPR013087 -
Seca8g05289 252 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05289 Seca-Chr8 143512798 143514180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05289 10 252 C2H2 Transcription Factor Family AT2G28200 43.643 6.91e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g05289 zf-C2H2_6 8.3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05289 - - gmx:100815595 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05289 8 143512798 143514180 Seca8g05289 8 143512798 143514180 ECH
Seca2g04702 2 133188183 133189043 Seca8g05289 8 143512798 143514180 ECH
Seca4g04197 4 75434033 75434917 Seca8g05289 8 143512798 143514180 ECH
Seca8g05289 8 143512798 143514180 Seca4g04197 4 75434033 75434917 ECH
Seca8g05289 8 143512798 143514180 Seca2g04702 2 133188183 133189043 PCT